The use of SARS-CoV-2-related coronaviruses from bats and pangolins to polarize mutations in SARS-Cov-2

doi:10.1007/s11427-020-1764-2

Comment

. 2020 Oct;63(10):1608-1611.

doi: 10.1007/s11427-020-1764-2. Epub 2020 Jul 1.

The use of SARS-CoV-2-related coronaviruses from bats and pangolins to polarize mutations in SARS-Cov-2

Tao Li^{1

2}, Xiaolu Tang³, Changcheng Wu³, Xinmin Yao³, Yirong Wang³, Xuemei Lu^{4

5}, Jian Lu⁶

Affiliations

¹ State Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, 650223, China.
² Center for Excellence in Animal Evolution and Genetics, Chinese Academy of Sciences, Kunming, 650223, China.
³ State Key Laboratory of Protein and Plant Gene Research, Center for Bioinformatics, School of Life Sciences, Peking University, Beijing, 100871, China.
⁴ State Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, 650223, China. xuemeilu@mail.kiz.cas.cn.
⁵ Center for Excellence in Animal Evolution and Genetics, Chinese Academy of Sciences, Kunming, 650223, China. xuemeilu@mail.kiz.cas.cn.
⁶ State Key Laboratory of Protein and Plant Gene Research, Center for Bioinformatics, School of Life Sciences, Peking University, Beijing, 100871, China. LUJ@pku.edu.cn.

PMID: 32621057
PMCID: PMC7332740
DOI: 10.1007/s11427-020-1764-2

Comment

The use of SARS-CoV-2-related coronaviruses from bats and pangolins to polarize mutations in SARS-Cov-2

Tao Li et al. Sci China Life Sci. 2020 Oct.

. 2020 Oct;63(10):1608-1611.

doi: 10.1007/s11427-020-1764-2. Epub 2020 Jul 1.

Authors

Tao Li^{1

2}, Xiaolu Tang³, Changcheng Wu³, Xinmin Yao³, Yirong Wang³, Xuemei Lu^{4

5}, Jian Lu⁶

Affiliations

¹ State Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, 650223, China.
² Center for Excellence in Animal Evolution and Genetics, Chinese Academy of Sciences, Kunming, 650223, China.
³ State Key Laboratory of Protein and Plant Gene Research, Center for Bioinformatics, School of Life Sciences, Peking University, Beijing, 100871, China.
⁴ State Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, 650223, China. xuemeilu@mail.kiz.cas.cn.
⁵ Center for Excellence in Animal Evolution and Genetics, Chinese Academy of Sciences, Kunming, 650223, China. xuemeilu@mail.kiz.cas.cn.
⁶ State Key Laboratory of Protein and Plant Gene Research, Center for Bioinformatics, School of Life Sciences, Peking University, Beijing, 100871, China. LUJ@pku.edu.cn.

PMID: 32621057
PMCID: PMC7332740
DOI: 10.1007/s11427-020-1764-2

No abstract available

PubMed Disclaimer

Comment on

A pneumonia outbreak associated with a new coronavirus of probable bat origin.
Zhou P, Yang XL, Wang XG, Hu B, Zhang L, Zhang W, Si HR, Zhu Y, Li B, Huang CL, Chen HD, Chen J, Luo Y, Guo H, Jiang RD, Liu MQ, Chen Y, Shen XR, Wang X, Zheng XS, Zhao K, Chen QJ, Deng F, Liu LL, Yan B, Zhan FX, Wang YY, Xiao GF, Shi ZL. Zhou P, et al. Nature. 2020 Mar;579(7798):270-273. doi: 10.1038/s41586-020-2012-7. Epub 2020 Feb 3. Nature. 2020. PMID: 32015507 Free PMC article.

Cited by

Global patterns of phylogenetic diversity and transmission of bat coronavirus.
Wang Z, Huang G, Huang M, Dai Q, Hu Y, Zhou J, Wei F. Wang Z, et al. Sci China Life Sci. 2023 Apr;66(4):861-874. doi: 10.1007/s11427-022-2221-5. Epub 2022 Nov 11. Sci China Life Sci. 2023. PMID: 36378474 Free PMC article.
SARS-CoV-2 variants, immune escape, COVID-19 vaccine, and therapeutic strategies.
Que H, Chen L, Wei X. Que H, et al. Sci China Life Sci. 2023 Feb;66(2):406-410. doi: 10.1007/s11427-021-2164-6. Epub 2022 Nov 3. Sci China Life Sci. 2023. PMID: 36342589 Free PMC article. No abstract available.
Evolutionary dynamics of the severe acute respiratory syndrome coronavirus 2 genomes.
Qian Z, Li P, Tang X, Lu J. Qian Z, et al. Med Rev (2021). 2022 Mar 1;2(1):3-22. doi: 10.1515/mr-2021-0035. eCollection 2022 Feb 1. Med Rev (2021). 2022. PMID: 35658106 Free PMC article. Review.
First COVID-19 lockdown resulted in most respiratory viruses disappearing among hospitalised children, with the exception of rhinoviruses.
Nenna R, Matera L, Pierangeli A, Oliveto G, Viscido A, Petrarca L, La Regina DP, Mancino E, Di Mattia G, Villani A, Midulla F. Nenna R, et al. Acta Paediatr. 2022 Jul;111(7):1399-1403. doi: 10.1111/apa.16326. Epub 2022 Mar 16. Acta Paediatr. 2022. PMID: 35266576 Free PMC article.
The high diversity of SARS-CoV-2-related coronaviruses in pangolins alerts potential ecological risks.
Peng MS, Li JB, Cai ZF, Liu H, Tang X, Ying R, Zhang JN, Tao JJ, Yin TT, Zhang T, Hu JY, Wu RN, Zhou ZY, Zhang ZG, Yu L, Yao YG, Shi ZL, Lu XM, Lu J, Zhang YP. Peng MS, et al. Zool Res. 2021 Nov 18;42(6):834-844. doi: 10.24272/j.issn.2095-8137.2021.334. Zool Res. 2021. PMID: 34766482 Free PMC article.

See all "Cited by" articles

References

1. Barriel V, Tassy P. Rooting with multiple outgroups: consensus versus parsimony. Cladistics. 1998;14:193–200. - PubMed
1. Forster P, Forster L, Renfrew C, Forster M. Phylogenetic network analysis of SARS-CoV-2 genomes. Proc Natl Acad Sci USA. 2020;117:9241–9243. doi: 10.1073/pnas.2004999117. - DOI - PMC - PubMed
1. Hernandez RD, Williamson SH, Bustamante CD. Context dependence, ancestral misidentification, and spurious signatures of natural selection. Mol Biol Evol. 2007;24:1792–1800. doi: 10.1093/molbev/msm108. - DOI - PubMed
1. Keightley PD, Jackson BC. Inferring the probability of the derived versus the ancestral allelic state at a polymorphic site. Genetics. 2018;209:897–906. - PMC - PubMed
1. Lam, T. T. Y., Jia, N., Zhang, Y. W., Shum, M. H. H., Jiang, J. F., Zhu, H. C., Tong, Y.G., Shi, Y.X., Ni, X.B., Liao, Y.S., et al. (2020). Identifying SARS-CoV-2-related coronaviruses in Malayan pangolins. Nature 10.1038/s41586-020-2169-0. - PubMed

Publication types

Actions
Actions

MeSH terms

Actions
Actions
Actions
Actions
Actions
Actions
Actions
Actions
Actions
Actions
Actions

LinkOut - more resources

Full Text Sources
Miscellaneous
- NCI CPTAC Assay Portal

[1] Barriel V, Tassy P. Rooting with multiple outgroups: consensus versus parsimony. Cladistics. 1998;14:193–200. - PubMed

[2] Barriel V, Tassy P. Rooting with multiple outgroups: consensus versus parsimony. Cladistics. 1998;14:193–200. - PubMed

[3] Forster P, Forster L, Renfrew C, Forster M. Phylogenetic network analysis of SARS-CoV-2 genomes. Proc Natl Acad Sci USA. 2020;117:9241–9243. doi: 10.1073/pnas.2004999117. - DOI - PMC - PubMed

[4] Forster P, Forster L, Renfrew C, Forster M. Phylogenetic network analysis of SARS-CoV-2 genomes. Proc Natl Acad Sci USA. 2020;117:9241–9243. doi: 10.1073/pnas.2004999117. - DOI - PMC - PubMed

[5] Hernandez RD, Williamson SH, Bustamante CD. Context dependence, ancestral misidentification, and spurious signatures of natural selection. Mol Biol Evol. 2007;24:1792–1800. doi: 10.1093/molbev/msm108. - DOI - PubMed

[6] Hernandez RD, Williamson SH, Bustamante CD. Context dependence, ancestral misidentification, and spurious signatures of natural selection. Mol Biol Evol. 2007;24:1792–1800. doi: 10.1093/molbev/msm108. - DOI - PubMed

[7] Keightley PD, Jackson BC. Inferring the probability of the derived versus the ancestral allelic state at a polymorphic site. Genetics. 2018;209:897–906. - PMC - PubMed

[8] Keightley PD, Jackson BC. Inferring the probability of the derived versus the ancestral allelic state at a polymorphic site. Genetics. 2018;209:897–906. - PMC - PubMed

[9] Lam, T. T. Y., Jia, N., Zhang, Y. W., Shum, M. H. H., Jiang, J. F., Zhu, H. C., Tong, Y.G., Shi, Y.X., Ni, X.B., Liao, Y.S., et al. (2020). Identifying SARS-CoV-2-related coronaviruses in Malayan pangolins. Nature 10.1038/s41586-020-2169-0. - PubMed

[10] Lam, T. T. Y., Jia, N., Zhang, Y. W., Shum, M. H. H., Jiang, J. F., Zhu, H. C., Tong, Y.G., Shi, Y.X., Ni, X.B., Liao, Y.S., et al. (2020). Identifying SARS-CoV-2-related coronaviruses in Malayan pangolins. Nature 10.1038/s41586-020-2169-0. - PubMed

Save citation to file

Email citation

Add to Collections

Add to My Bibliography

Your saved search

Create a file for external citation management software

Your RSS Feed

The use of SARS-CoV-2-related coronaviruses from bats and pangolins to polarize mutations in SARS-Cov-2

Affiliations

The use of SARS-CoV-2-related coronaviruses from bats and pangolins to polarize mutations in SARS-Cov-2

Authors

Affiliations

Comment on

Similar articles

Cited by

References

Publication types

MeSH terms

LinkOut - more resources

Full Text Sources

Miscellaneous