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. 2019 Jul 11;14(7):e0219667.
doi: 10.1371/journal.pone.0219667. eCollection 2019.

SRAP analysis of the genetic diversity of wild castor (Ricinus communis L.) in South China

Affiliations

SRAP analysis of the genetic diversity of wild castor (Ricinus communis L.) in South China

Kwadwo Gyapong Agyenim-Boateng et al. PLoS One. .

Abstract

Castor bean is an important seed oil crop. Castor oil is a highly demanded oil for several industrial uses. Currently, castor bean varieties suffer from low productivity and high risk of insect pests and diseases. It is in urgent need to mine elite genes from wild materials for castor breeding. 29 pairs of polymorphic SRAP primers out of 361 pairs were used to analyse the genetic diversity of 473 wild castor materials from South China. 203 bands were amplified by the 29 pairs of primers, of which 169 bands were polymorphic, with a polymorphic percentage of 83.25%. With an average number of alleles per locus (Ap) of 1.801, average number of effective alleles per locus (Ae) of 1.713 and average percentage of polymorphic loci (P) of 90.04%, these primers were proven to be useful and effective. Nei' genetic distance between the materials ranged from 1.04 to 25.02, with an average of 13.03. At the genetic distance of 25.02, the materials clustered into two major groups, consistent with the result of population structure analysis. However, more subgroups existed between 5.21 and 13.32. Although not all the materials from the same region were clustered in the same group, an obvious trend existed where the groups were related to regions to a great extent. Based on multiple indices, the genetic diversity of materials from Hainan was the lowest. However, there was not much difference between West Guangdong and Guangxi, although the former was slightly higher. Moderate genetic differentiation was observed in wild materials in South China. The genetic differentiation mainly occurred within population, with maximum differentiation in Guangxi, followed by West Guangdong and the minimum in Hainan. Nonetheless, there was an extensive geneflow between populations. The above results provided a direction for the conservation and breeding application of these materials.

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Conflict of interest statement

The authors have declared that no competing interests exist.

Figures

Fig 1
Fig 1. Locations of the accessions on the map of China.
Fig 2
Fig 2. Amplified profiles of different materials by SRAP primers M2E7.
Fig 3
Fig 3. A dendrogram of 473 wild castor materials based on SRAP analysis.
Fig 4
Fig 4. Phylogenetic tree of 245 castor materials from West Guangdong (GD).
LZ5, ZJ92, DHD67, MZ-TP2 have been highlighted for easy identification.
Fig 5
Fig 5. Phylogenetic tree of 168 castor materials from Guangxi (GX).
GX172, GX 113, GX78 have been highlighted for easy identification.
Fig 6
Fig 6. Phylogenetic tree of 60 materials from Hainan (HN).
HNDF-2 has been highlighted for easy identification.
Fig 7
Fig 7. Estimates of the rate of the slope of the log probability curve (DK) plotted against K.
Fig 8
Fig 8. Assignment of 473 castor accessions into two clusters (red and green) with STRUCTURE 2.3.4.

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Grants and funding

This work was supported by the National Natural Science Foundation of China (31271759) to XY; Guangdong Provincial Science and Technology Projects (2013B060400024, 2014A020208116, 2016A020208015) (China) to XY; and the Project of Enhancing School with Innovation of Guangdong Ocean University (GDOU2013050206) (China) to XY. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.