Influenza Virus Subtyping by Multiplex PCR during Winter Months of 2017-2018
- PMID: 31036119
- DOI: 10.29271/jcpsp.2019.05.459
Influenza Virus Subtyping by Multiplex PCR during Winter Months of 2017-2018
Abstract
Objective: To determine the frequency of infections caused by Influenza viruses, i.e. Influenza A (H1N1) pdm09, Influenza A (H3N2) and Influenza B in patients presenting with respiratory tract infections, i.e. influenza-like illness (ILI) and severe acute respiratory illness (SARI).
Study design: Descriptive, cross-sectional study.
Place and duration of study: Department of Virology, Armed Forces Institute of Pathology (AFIP), Rawalpindi, from October 2017 to February 2018.
Methodology: A total of 624 samples from patients with respiratory tract infections (both ILI and SARI) were included in the study. Specimens collected from the patients included nasal swabs and throat swabs, which were transported in viral transport medium (VTM) to Virology Department, AFIP. Multiplex PCR was done for Influenza A (H1N1) pdm09, Influenza A (H3N2) and Influenza B.
Results: A total of 200 (32%) samples were found to be positive for Influenza viruses. Out of total 624 samples analysed, 220 (35.3%) were from females and 404 (64.7%) from males. Among these, 510 (81.7%) presented with ILI and 114 (18.3%) with SARI. Among positive samples, 120 (19.2%) samples were positive for H1N1, 61 (9.8%) for H3N2 and 19 (3%) were positive for Influenza B. Highest number of positive cases occurred in the month of January, i.e. 148 (74%) cases. Only 3 (2.5%) patients out of 120 infected with H1N1 were in age group-I (0-5 years). While in age group-II (6-30 years), age group-III (31-60 years), and age group-IV (>60 years); 39 (32.5%), 63 (52.5%) and 15 (12.5%) patients were infected by H1N1, respectively. Maximum patients with H3N2 infection were in age group-III; 30 (49.2%) of the total 61. Commonest Influenza subtype in age group-IV was H3N2 found in 20 (32.8%) patients, followed by H1N1 in 15 (12.5%) patients.
Conclusion: The dominant subtype in our set-up, during winter of 2017-2018, was Influenza A (H1N1) pdm09. Highest numbers of positive cases were recorded in the month of January. People with ILI and SARI should be tested for Influenza viruses to avoid unnecessary use of antibiotics.
Similar articles
-
Influenza Sentinel Surveillance among Patients with Influenza-Like-Illness and Severe Acute Respiratory Illness within the Framework of the National Reference Laboratory, Niger, 2009-2013.PLoS One. 2015 Jul 31;10(7):e0133178. doi: 10.1371/journal.pone.0133178. eCollection 2015. PLoS One. 2015. PMID: 26230666 Free PMC article.
-
Epidemiology of influenza in West Africa after the 2009 influenza A(H1N1) pandemic, 2010-2012.BMC Infect Dis. 2017 Dec 4;17(1):745. doi: 10.1186/s12879-017-2839-1. BMC Infect Dis. 2017. PMID: 29202715 Free PMC article.
-
Epidemiology of influenza in Ethiopia: findings from influenza sentinel surveillance and respiratory infection outbreak investigations, 2009-2015.BMC Infect Dis. 2018 Sep 3;18(1):449. doi: 10.1186/s12879-018-3365-5. BMC Infect Dis. 2018. PMID: 30176806 Free PMC article.
-
Laboratory diagnosis of human seasonal and pandemic influenza virus infection.Med J Aust. 2006 Nov 20;185(S10):S48-53. doi: 10.5694/j.1326-5377.2006.tb00707.x. Med J Aust. 2006. PMID: 17115952 Free PMC article. Review.
-
Spotlight influenza: Laboratory-confirmed seasonal influenza in people with acute respiratory illness: a literature review and meta-analysis, WHO European Region, 2004 to 2017.Euro Surveill. 2021 Sep;26(39):2000343. doi: 10.2807/1560-7917.ES.2021.26.39.2000343. Euro Surveill. 2021. PMID: 34596019 Free PMC article. Review.
Cited by
-
Clinical effects of basic nursing combined with psychological intervention on treatment compliance of patients with Influenza-A(H1N1).Pak J Med Sci. 2024 Aug;40(7):1497-1502. doi: 10.12669/pjms.40.7.8675. Pak J Med Sci. 2024. PMID: 39092031 Free PMC article.
-
Prevalence of SARS-COV-2 and other respiratory pathogens among a Jordanian subpopulation during Delta-to-Omicron transition: Winter 2021/2022.PLoS One. 2023 Mar 30;18(3):e0283804. doi: 10.1371/journal.pone.0283804. eCollection 2023. PLoS One. 2023. PMID: 36996148 Free PMC article.
MeSH terms
LinkOut - more resources
Medical
Research Materials