Functions of short lifetime biological structures at large: the case of intrinsically disordered proteins
- PMID: 29982297
- DOI: 10.1093/bfgp/ely023
Functions of short lifetime biological structures at large: the case of intrinsically disordered proteins
Abstract
Although for more than a century a protein function was intimately associated with the presence of unique structure in a protein molecule, recent years witnessed a skyrocket rise of the appreciation of protein intrinsic disorder concept that emphasizes the importance of the biologically active proteins without ordered structures. In different proteins, the depth and breadth of disorder penetrance are different, generating an amusing spatiotemporal heterogeneity of intrinsically disordered proteins (IDPs) and intrinsically disordered protein region regions (IDPRs), which are typically described as highly dynamic ensembles of rapidly interconverting conformations (or a multitude of short lifetime structures). IDPs/IDPRs constitute a substantial part of protein kingdom and have unique functions complementary to functional repertoires of ordered proteins. They are recognized as interaction specialists and global controllers that play crucial roles in regulation of functions of their binding partners and in controlling large biological networks. IDPs/IDPRs are characterized by immense binding promiscuity and are able to use a broad spectrum of binding modes, often resulting in the formation of short lifetime complexes. In their turn, functions of IDPs and IDPRs are controlled by various means, such as numerous posttranslational modifications and alternative splicing. Some of the functions of IDPs/IDPRs are briefly considered in this review to shed some light on the biological roles of short-lived structures at large.
Keywords: intrinsically disordered proteins; liquid–liquid phase transitions; multifunctionality; proteinaceous membrane-less organelles; protein–protein interactions; structural heterogeneity.
© The Author(s) 2018. Published by Oxford University Press. All rights reserved. For permissions, please email: journals.permissions@oup.com.
Similar articles
-
Intrinsic Disorder, Protein-Protein Interactions, and Disease.Adv Protein Chem Struct Biol. 2018;110:85-121. doi: 10.1016/bs.apcsb.2017.06.005. Epub 2017 Jul 24. Adv Protein Chem Struct Biol. 2018. PMID: 29413001 Review.
-
Intrinsic disorder-based protein interactions and their modulators.Curr Pharm Des. 2013;19(23):4191-213. doi: 10.2174/1381612811319230005. Curr Pharm Des. 2013. PMID: 23170892 Review.
-
Intrinsically disordered proteins in crowded milieu: when chaos prevails within the cellular gumbo.Cell Mol Life Sci. 2018 Nov;75(21):3907-3929. doi: 10.1007/s00018-018-2894-9. Epub 2018 Jul 31. Cell Mol Life Sci. 2018. PMID: 30066087 Free PMC article. Review.
-
Dancing Protein Clouds: The Strange Biology and Chaotic Physics of Intrinsically Disordered Proteins.J Biol Chem. 2016 Mar 25;291(13):6681-8. doi: 10.1074/jbc.R115.685859. Epub 2016 Feb 5. J Biol Chem. 2016. PMID: 26851286 Free PMC article. Review.
-
Intrinsically disordered proteins and structured proteins with intrinsically disordered regions have different functional roles in the cell.PLoS One. 2019 Aug 19;14(8):e0217889. doi: 10.1371/journal.pone.0217889. eCollection 2019. PLoS One. 2019. PMID: 31425549 Free PMC article.
Cited by
-
SPOT-Disorder2: Improved Protein Intrinsic Disorder Prediction by Ensembled Deep Learning.Genomics Proteomics Bioinformatics. 2019 Dec;17(6):645-656. doi: 10.1016/j.gpb.2019.01.004. Epub 2020 Mar 13. Genomics Proteomics Bioinformatics. 2019. PMID: 32173600 Free PMC article.
-
Out-of-Equilibrium Biophysical Chemistry: The Case for Multidimensional, Integrated Single-Molecule Approaches.J Phys Chem B. 2021 Sep 23;125(37):10404-10418. doi: 10.1021/acs.jpcb.1c02424. Epub 2021 Sep 10. J Phys Chem B. 2021. PMID: 34506140 Free PMC article.
-
Proteasome Activation to Combat Proteotoxicity.Molecules. 2019 Aug 5;24(15):2841. doi: 10.3390/molecules24152841. Molecules. 2019. PMID: 31387243 Free PMC article. Review.
-
IDPology of the living cell: intrinsic disorder in the subcellular compartments of the human cell.Cell Mol Life Sci. 2021 Mar;78(5):2371-2385. doi: 10.1007/s00018-020-03654-0. Epub 2020 Sep 30. Cell Mol Life Sci. 2021. PMID: 32997198 Free PMC article.
-
Profiling human pathogenic repeat expansion regions by synergistic and multi-level impacts on molecular connections.Hum Genet. 2023 Feb;142(2):245-274. doi: 10.1007/s00439-022-02500-6. Epub 2022 Nov 7. Hum Genet. 2023. PMID: 36344696 Free PMC article.
Publication types
MeSH terms
Substances
LinkOut - more resources
Full Text Sources
Other Literature Sources