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. 2018 May 14;92(11):e00095-18.
doi: 10.1128/JVI.00095-18. Print 2018 Jun 1.

Antigenically Diverse Swine Origin H1N1 Variant Influenza Viruses Exhibit Differential Ferret Pathogenesis and Transmission Phenotypes

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Antigenically Diverse Swine Origin H1N1 Variant Influenza Viruses Exhibit Differential Ferret Pathogenesis and Transmission Phenotypes

Joanna A Pulit-Penaloza et al. J Virol. .

Abstract

Influenza A(H1) viruses circulating in swine represent an emerging virus threat, as zoonotic infections occur sporadically following exposure to swine. A fatal infection caused by an H1N1 variant (H1N1v) virus was detected in a patient with reported exposure to swine and who presented with pneumonia, respiratory failure, and cardiac arrest. To understand the genetic and phenotypic characteristics of the virus, genome sequence analysis, antigenic characterization, and ferret pathogenesis and transmissibility experiments were performed. Antigenic analysis of the virus isolated from the fatal case, A/Ohio/09/2015, demonstrated significant antigenic drift away from the classical swine H1N1 variant viruses and H1N1 pandemic 2009 viruses. A substitution in the H1 hemagglutinin (G155E) was identified that likely impacted antigenicity, and reverse genetics was employed to understand the molecular mechanism of antibody escape. Reversion of the substitution to 155G, in a reverse genetics A/Ohio/09/2015 virus, showed that this residue was central to the loss of hemagglutination inhibition by ferret antisera raised against a prototypical H1N1 pandemic 2009 virus (A/California/07/2009), as well as gamma lineage classical swine H1N1 viruses, demonstrating the importance of this residue for antibody recognition of this H1 lineage. When analyzed in the ferret model, A/Ohio/09/2015 and another H1N1v virus, A/Iowa/39/2015, as well as A/California/07/2009, replicated efficiently in the respiratory tract of ferrets. The two H1N1v viruses transmitted efficiently among cohoused ferrets, but respiratory droplet transmission studies showed that A/California/07/2009 transmitted through the air more efficiently. Preexisting immunity to A/California/07/2009 did not fully protect ferrets from challenge with A/Ohio/09/2015.IMPORTANCE Human infections with classical swine influenza A(H1N1) viruses that circulate in pigs continue to occur in the United States following exposure to swine. To understand the genetic and virologic characteristics of a virus (A/Ohio/09/2015) associated with a fatal infection and a virus associated with a nonfatal infection (A/Iowa/39/2015), we performed genome sequence analysis, antigenic testing, and pathogenicity and transmission studies in a ferret model. Reverse genetics was employed to identify a single antigenic site substitution (HA G155E) responsible for antigenic variation of A/Ohio/09/2015 compared to related classical swine influenza A(H1N1) viruses. Ferrets with preexisting immunity to the pandemic A(H1N1) virus were challenged with A/Ohio/09/2015, demonstrating decreased protection. These data illustrate the potential for currently circulating swine influenza viruses to infect and cause illness in humans with preexisting immunity to H1N1 pandemic 2009 viruses and a need for ongoing risk assessment and development of candidate vaccine viruses for improved pandemic preparedness.

Keywords: antigenic variation; reverse genetic analysis; swine influenza virus; transmissibility; viral pathogenesis.

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Figures

FIG 1
FIG 1
Evolutionary relationships of the hemagglutinin genes of H1N1v and swine influenza viruses detected in North America. The H1N1pdm09 candidate vaccine virus, A/California/07/2009, is shown in red. Viruses isolated from humans are in green. Viruses possessing HA 155E (shown in purple) are annotated with this residue at the right of each strain name. The scale bar represents nucleotide substitutions per site.
FIG 2
FIG 2
Genome constellations of H1N1v viruses detected in the United States. Dashed red box indicates genes derived from H1N1pdm09 virus, red indicates genes derived from Eurasian swine lineage, green indicates genes derived from human seasonal lineage, yellow indicates genes derived from avian North American lineage, and blue indicates classical swine H1N1 North American lineage.
FIG 3
FIG 3
Influenza virus titers in ferret tissues. Three ferrets each were intranasally inoculated with 105 PFU of A/Ohio/09/20015 (A), A/Iowa/39/2015 (B), or A/California/07/2009 (C) virus. Tissues were collected on day 3 p.i. from ferrets inoculated with OH/09 or IA/39 virus and on day 4 p.i. from ferrets inoculated with CA/07 virus. Virus titers in nasal turbinates (NT) are expressed as log10 PFU/ml of tissue homogenate and in trachea (TR) and lungs (LG) as log10 PFU/g of tissue. The limit of detection was 10 PFU. Gray, white, and black bars indicate one of each of the three ferrets tested.
FIG 4
FIG 4
Transmissibility of H1N1v viruses among cohoused ferrets. Three ferrets each were intranasally inoculated with 105 PFU of A/Ohio/09/2015 (A) or A/Iowa/39/2015 (B) virus. The following day, a naive ferret was placed with each inoculated ferret in the same cage. Nasal wash titers from individual inoculated (left side of the graph) and contact (dotted bars; right side of the graph) ferrets were assessed by plaque assay. Limit of detection was 10 PFU. Gray, white, and black bars indicate one of each of the three ferrets tested.
FIG 5
FIG 5
Respiratory droplet transmissibility of H1N1v and H1N1pdm09 viruses in ferrets. Three ferrets each were intranasally inoculated with 105 PFU of A/Ohio/09/2015 (A), A/Iowa/39/2015 (B), or A/California/07/2009 (C) virus. The following day, a naive ferret was placed in a cage adjacent to each inoculated ferret. Nasal wash titers from individual inoculated (left side of the graph) and contact (dotted bars; right side of the graph) ferrets were collected on the days indicated and assessed by plaque assay. Limit of detection was 10 PFU. Gray, white, and black bars indicate one of each of the three ferrets tested.
FIG 6
FIG 6
Effect of prior exposure to H1N1pdm09 virus on cross-protection from H1N1v virus challenge in ferrets. (A) Hemagglutination inhibition titers of sera collected from ferrets 22 days after exposure to the A/California/07/2009-inoculated ferrets (primary challenge) or collected from ferrets 22 days after rechallenge with 105 PFU of heterologous virus, A/Ohio/09/2015 (CA/07→OH/09). Black circles show HI titers against A/California/07/2009 virus, and empty circles show titers against A/Ohio/09/2015 virus. Geometric mean hemagglutination inhibition titers (95% confidence interval) are shown. (B and C) Nasal wash titers from ferrets exposed to A/California/07/2009 virus and then rechallenged 31 days later with 105 PFU of A/California/07/2009 virus (n = 3) (B) or A/Ohio/09/2015 (n = 6 on days 2 and 4 p.i.; n = 3 on day 6 p.i.) (C). Viral titers in nasal wash samples collected on the indicated days were assessed by plaque assay. Limit of detection was 10 PFU. Error bars represent ±SD.

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