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Review
. 2017 Jul 25;8(30):50187-50192.
doi: 10.18632/oncotarget.16238.

Structural homologies between phenformin, lipitor and gleevec aim the same metabolic oncotarget in leukemia and melanoma

Affiliations
Review

Structural homologies between phenformin, lipitor and gleevec aim the same metabolic oncotarget in leukemia and melanoma

Gábor Somlyai et al. Oncotarget. .

Abstract

Phenformin's recently demonstrated efficacy in melanoma and Gleevec's demonstrated anti-proliferative action in chronic myeloid leukemia may lie within these drugs' significant pharmacokinetics, pharmacodynamics and structural homologies, which are reviewed herein. Gleevec's success in turning a fatal leukemia into a manageable chronic disease has been trumpeted in medical, economic, political and social circles because it is considered the first successful targeted therapy. Investments have been immense in omics analyses and while in some cases they greatly helped the management of patients, in others targeted therapies failed to achieve clinically stable recurrence-free disease course or to substantially extend survival. Nevertheless protein kinase controlling approaches have persisted despite early warnings that the targeted genomics narrative is overblown. Experimental and clinical observations with Phenformin suggest an alternative explanation for Gleevec's mode of action. Using 13C-guided precise flux measurements, a comparative multiple cell line study demonstrated the drug's downstream impact on submolecular fatty acid processing metabolic events that occurred independent of Gleevec's molecular target. Clinical observations that hyperlipidemia and diabetes are both reversed in mice and in patients taking Gleevec support the drugs' primary metabolic targets by biguanides and statins. This is evident by structural data demonstrating that Gleevec shows pyridine- and phenyl-guanidine homology with Phenformin and identical phenylcarbamoyl structural and ligand binding homology with Lipitor. The misunderstood mechanism of action of Gleevec is emblematic of the pervasive flawed reasoning that genomic analysis will lead to targeted, personalized diagnosis and therapy. The alternative perspective for Gleevec's mode of action may turn oncotargets towards metabolic channel reaction architectures in leukemia and melanoma, as well as in other cancers.

Keywords: deuterobolomics; imatinib; lipitor; metformin; phenformin.

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Conflict of interest statement

CONFLICTS OF INTERESTS

Gábor Somlyai is employed by HYD, LLC. T. Que Collins is employed by and László G. Boros has academic consulting arrangements with 13Cignature 2Health Metabolic Clinic, Santa Monica, CA 90403, USA. Dr. Boros is an academic advisor of SiDMAP, LLC under FDA/OO/OFBA/OAGS/DAP branch work order HHSF223201610399A. None of the above entities are traded publically or share views necessarily with that of the authors.

Figures

Figure 1
Figure 1. Structural homologies between Gleevec, Phenformin and Lipitor
Pharmacodynamically modified (cleaved) Gleevec after binding (please see Figure 2 for binding homologies) has identical phenylcarbamoyl overlap with Lipitor (blue circles) that are produced by first round drug modification pharmacodynamics reactions involving oxidation and cleavage by cytochrome P450 family 3 subfamily A member 4 enzymes. Green cylinders indicate similar phenyl-pyrrole (Lipitor) and phenyl-piperazine (Gleevec) derivatives after the dihydroxyheptanoic acid residue is cleaved typically by β carbon oxidation. Orange circles show Phenformin and Gleevec sharing phenethylcarbamimidoyl- and pyridine-methyl-guanidine groups. Lactic acidosis is a common side effect of diguanidine drugs, which is also described in Gleevec [6] and Metformin [12, 31] treated cell cultures, as well as in Gleevec treated clinically drug resistant cells [22, 23].
Figure 2
Figure 2. Gleevec's proton sharing binding properties via overlapping structural amino acid sites in BCR-ABL and Lipitor and Phenformin binding ligands
Drug binding low affinity and high capacity hydrogen bonding architectures are shared among Lipitor, Phenformin, Metformin and Gleevec. Lipitor has similar proton bridging architectures by its structural homologies with Gleevec (red arrows). These include histidine, leucine, iso-leucine, as well as serine, as visualized by two dimensional protein−ligand complex architectures [19]. Gleevec's guanidine group binds to BCR-ABL through Threonine-315 (green arrows), which is similar to the binding of Metformin and Phenformin to the AMPK-γ subunit to induce conformational changes and promote the phosphorylation of Threonine-172 in AMPK. Stoichiometric modifications of Threonine-315 and Methionine-319 in BCR-ABL by the phenethylcarbamimidoyl- and pyridine-methyl-guanidine groups of Gleevec are evident. (Black dashed lines in Lipitor indicate hydrogen bonds, salt bridges, and metal interactions. The green solid line (not the arrows) shows hydrophobic interactions and green dashed lines show π-π and π-cation interactions, which are determined by geometric criteria as described in [19].

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