Interconnections between mRNA degradation and RDR-dependent siRNA production in mRNA turnover in plants

doi:10.1007/s10265-017-0906-8

Review

. 2017 Mar;130(2):211-226.

doi: 10.1007/s10265-017-0906-8. Epub 2017 Feb 14.

Interconnections between mRNA degradation and RDR-dependent siRNA production in mRNA turnover in plants

Masayuki Tsuzuki^{1

2}, Kazuki Motomura³, Naoyoshi Kumakura⁴, Atsushi Takeda⁵

Affiliations

¹ Department of Life Sciences, Graduate School of Arts and Sciences, The University of Tokyo, Tokyo, 153-8902, Japan.
² Department of Molecular, Cellular and Developmental Biology, University of Michigan, Ann Arbor, MI, 48109, USA.
³ Institute of Transformative Bio-Molecules, Nagoya University, Furo-cho, Chikusa-ku, Nagoya, Aichi, 464-8601, Japan.
⁴ Center for Sustainable Resource Science, RIKEN, Suehiro-cho 1-7-22, Tsurumi-ku, Yokohama, Kanagawa, 230-0045, Japan.
⁵ Department of Biotechnology, Graduate School of Life Sciences, Ritsumeikan University, Shiga, 525-8577, Japan. atakeda@fc.ritsumei.ac.jp.

PMID: 28197782
DOI: 10.1007/s10265-017-0906-8

Review

Interconnections between mRNA degradation and RDR-dependent siRNA production in mRNA turnover in plants

Masayuki Tsuzuki et al. J Plant Res. 2017 Mar.

. 2017 Mar;130(2):211-226.

doi: 10.1007/s10265-017-0906-8. Epub 2017 Feb 14.

Authors

Masayuki Tsuzuki^{1

2}, Kazuki Motomura³, Naoyoshi Kumakura⁴, Atsushi Takeda⁵

Affiliations

¹ Department of Life Sciences, Graduate School of Arts and Sciences, The University of Tokyo, Tokyo, 153-8902, Japan.
² Department of Molecular, Cellular and Developmental Biology, University of Michigan, Ann Arbor, MI, 48109, USA.
³ Institute of Transformative Bio-Molecules, Nagoya University, Furo-cho, Chikusa-ku, Nagoya, Aichi, 464-8601, Japan.
⁴ Center for Sustainable Resource Science, RIKEN, Suehiro-cho 1-7-22, Tsurumi-ku, Yokohama, Kanagawa, 230-0045, Japan.
⁵ Department of Biotechnology, Graduate School of Life Sciences, Ritsumeikan University, Shiga, 525-8577, Japan. atakeda@fc.ritsumei.ac.jp.

PMID: 28197782
DOI: 10.1007/s10265-017-0906-8

Abstract

Accumulation of an mRNA species is determined by the balance between the synthesis and the degradation of the mRNA. Individual mRNA molecules are selectively and actively degraded through RNA degradation pathways, which include 5'-3' mRNA degradation pathway, 3'-5' mRNA degradation pathway, and RNA-dependent RNA polymerase-mediated mRNA degradation pathway. Recent studies have revealed that these RNA degradation pathways compete with each other in mRNA turnover in plants and that plants have a hidden layer of non-coding small-interfering RNA production from a set of mRNAs. In this review, we summarize the current information about plant mRNA degradation pathways in mRNA turnover and discuss the potential roles of a novel class of the endogenous siRNAs derived from plant mRNAs.

Keywords: 3′-5′ mRNA degradation; 5′-3′ mRNA degradation; Coding transcript-derived siRNA; RNA exosome; RNA quality control-siRNA; RNA silencing; RNA-dependent RNA polymerase; Virus-activated siRNA; mRNA turnover.

PubMed Disclaimer

Cited by

Analysis of mRNA-derived siRNAs in mutants of mRNA maturation and surveillance pathways in Arabidopsis thaliana.
Krzyszton M, Kufel J. Krzyszton M, et al. Sci Rep. 2022 Jan 27;12(1):1474. doi: 10.1038/s41598-022-05574-4. Sci Rep. 2022. PMID: 35087200 Free PMC article.
The TUTase URT1 connects decapping activators and prevents the accumulation of excessively deadenylated mRNAs to avoid siRNA biogenesis.
Scheer H, de Almeida C, Ferrier E, Simonnot Q, Poirier L, Pflieger D, Sement FM, Koechler S, Piermaria C, Krawczyk P, Mroczek S, Chicher J, Kuhn L, Dziembowski A, Hammann P, Zuber H, Gagliardi D. Scheer H, et al. Nat Commun. 2021 Feb 26;12(1):1298. doi: 10.1038/s41467-021-21382-2. Nat Commun. 2021. PMID: 33637717 Free PMC article.
RNA decay is an antiviral defense in plants that is counteracted by viral RNA silencing suppressors.
Li F, Wang A. Li F, et al. PLoS Pathog. 2018 Aug 3;14(8):e1007228. doi: 10.1371/journal.ppat.1007228. eCollection 2018 Aug. PLoS Pathog. 2018. PMID: 30075014 Free PMC article.
Host factors against plant viruses.
Garcia-Ruiz H. Garcia-Ruiz H. Mol Plant Pathol. 2019 Nov;20(11):1588-1601. doi: 10.1111/mpp.12851. Epub 2019 Jul 8. Mol Plant Pathol. 2019. PMID: 31286679 Free PMC article. Review.
Proteasome subunit RPT2a promotes PTGS through repressing RNA quality control in Arabidopsis.
Kim MH, Jeon J, Lee S, Lee JH, Gao L, Lee BH, Park JM, Kim YJ, Kwak JM. Kim MH, et al. Nat Plants. 2019 Dec;5(12):1273-1282. doi: 10.1038/s41477-019-0546-1. Epub 2019 Nov 18. Nat Plants. 2019. PMID: 31740770

See all "Cited by" articles

References

1. Plant Cell. 2012 Dec;24(12):4837-49 - PubMed
1. J Cell Physiol. 2016 Feb;231(2):303-13 - PubMed
1. Plant J. 2008 Nov;56(4):517-30 - PubMed
1. Plant Cell Physiol. 2008 Apr;49(4):493-500 - PubMed
1. PLoS Genet. 2014 Sep 11;10(9):e1004612 - PubMed

Publication types

Actions

MeSH terms

Actions
Actions
Actions
Actions
Actions
Actions
Actions
Actions
Actions
Actions
Actions
Actions
Actions

Substances

Actions
Actions
Actions
Actions

LinkOut - more resources

Full Text Sources
- Springer
Other Literature Sources
- scite Smart Citations

[1] Plant Cell. 2012 Dec;24(12):4837-49 - PubMed

[2] Plant Cell. 2012 Dec;24(12):4837-49 - PubMed

[3] J Cell Physiol. 2016 Feb;231(2):303-13 - PubMed

[4] J Cell Physiol. 2016 Feb;231(2):303-13 - PubMed

[5] Plant J. 2008 Nov;56(4):517-30 - PubMed

[6] Plant J. 2008 Nov;56(4):517-30 - PubMed

[7] Plant Cell Physiol. 2008 Apr;49(4):493-500 - PubMed

[8] Plant Cell Physiol. 2008 Apr;49(4):493-500 - PubMed

[9] PLoS Genet. 2014 Sep 11;10(9):e1004612 - PubMed

[10] PLoS Genet. 2014 Sep 11;10(9):e1004612 - PubMed

Save citation to file

Email citation

Add to Collections

Add to My Bibliography

Your saved search

Create a file for external citation management software

Your RSS Feed

Interconnections between mRNA degradation and RDR-dependent siRNA production in mRNA turnover in plants

Affiliations

Interconnections between mRNA degradation and RDR-dependent siRNA production in mRNA turnover in plants

Authors

Affiliations

Abstract

Similar articles

Cited by

References

Publication types

MeSH terms

Substances

LinkOut - more resources

Full Text Sources

Other Literature Sources