Full-Genome Sequences of Seven Fatal Enterovirus 71 Strains Isolated in Shenzhen, China, in 2014

doi:10.1128/genomeA.00316-16

. 2016 Apr 28;4(2):e00316-16.

doi: 10.1128/genomeA.00316-16.

Full-Genome Sequences of Seven Fatal Enterovirus 71 Strains Isolated in Shenzhen, China, in 2014

Long Chen¹, Ya-Qing He¹, Jun Meng¹, Ling-Hong Xiong¹, Chao Wang¹, Xiang-Jie Yao¹, Hai-Long Zhang¹, Ren-Li Zhang¹, Hong Yang²

Affiliations

¹ Major Infectious Disease Control Key Laboratory, The Department of Microbiology, Shenzhen Center for Disease Control and Prevention, Shenzhen, People's Republic of China Shenzhen Public Service Platform of Pathogenic Microorganisms Repository, The Department of Microbiology, Shenzhen Center for Disease Control and Prevention, Shenzhen, People's Republic of China.
² Major Infectious Disease Control Key Laboratory, The Department of Microbiology, Shenzhen Center for Disease Control and Prevention, Shenzhen, People's Republic of China Shenzhen Public Service Platform of Pathogenic Microorganisms Repository, The Department of Microbiology, Shenzhen Center for Disease Control and Prevention, Shenzhen, People's Republic of China chen_l_2011@163.com.

PMID: 27125487
PMCID: PMC4850858
DOI: 10.1128/genomeA.00316-16

Full-Genome Sequences of Seven Fatal Enterovirus 71 Strains Isolated in Shenzhen, China, in 2014

Long Chen et al. Genome Announc. 2016.

. 2016 Apr 28;4(2):e00316-16.

doi: 10.1128/genomeA.00316-16.

Authors

Long Chen¹, Ya-Qing He¹, Jun Meng¹, Ling-Hong Xiong¹, Chao Wang¹, Xiang-Jie Yao¹, Hai-Long Zhang¹, Ren-Li Zhang¹, Hong Yang²

Affiliations

¹ Major Infectious Disease Control Key Laboratory, The Department of Microbiology, Shenzhen Center for Disease Control and Prevention, Shenzhen, People's Republic of China Shenzhen Public Service Platform of Pathogenic Microorganisms Repository, The Department of Microbiology, Shenzhen Center for Disease Control and Prevention, Shenzhen, People's Republic of China.
² Major Infectious Disease Control Key Laboratory, The Department of Microbiology, Shenzhen Center for Disease Control and Prevention, Shenzhen, People's Republic of China Shenzhen Public Service Platform of Pathogenic Microorganisms Repository, The Department of Microbiology, Shenzhen Center for Disease Control and Prevention, Shenzhen, People's Republic of China chen_l_2011@163.com.

PMID: 27125487
PMCID: PMC4850858
DOI: 10.1128/genomeA.00316-16

Abstract

The whole-genome sequences of seven fatal enterovirus 71 (EV71) strains, isolated in southern China, in 2014, were determined. The complete genome sequences of these strains displayed close relationships to native EV71 strains and showed 94.2% to 99.8% identity to each other. All of these strains were assigned to subgenotype C4a based on phylogenetic analysis of the VP1 gene.

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References

1. Ooi MH, Wong SC, Lewthwaite P, Cardosa MJ, Solomon T. 2010. Clinical features, diagnosis, and management of enterovirus 71. Lancet Neurol 9:1097–1105. doi:10.1016/S1474-4422(10)70209-X. - DOI - PubMed
1. Tapparel C, Siegrist F, Petty TJ, Kaiser L. 2013. Picornavirus and enterovirus diversity with associated human diseases. Infect Genet Evol 14:282–293. doi:10.1016/j.meegid.2012.10.016. - DOI - PubMed
1. Oberste MS, Peñaranda S, Maher K, Pallansch MA. 2004. Complete genome sequences of all members of the species human enterovirus A. J Gen Virol 85:1597–1607. doi:10.1099/vir.0.79789-0. - DOI - PubMed
1. Tee KK, Lam TT, Chan YF, Bible JM, Kamarulzaman A, Tong CY, Takebe Y, Pybus OG. 2010. Evolutionary genetics of human enterovirus 71: origin, population dynamics, natural selection, and seasonal periodicity of the VP1 gene. J Virol 84:3339–3350. doi:10.1128/JVI.01019-09. - DOI - PMC - PubMed
1. Van der Sanden S, van der Avoort H, Lemey P, Uslu G, Koopmans M. 2010. Evolutionary trajectory of the VP1 gene of human enterovirus 71 genogroup B and C viruses. J Gen Virol 91:1949–1958. doi:10.1099/vir.0.019695-0. - DOI - PubMed

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[1] Ooi MH, Wong SC, Lewthwaite P, Cardosa MJ, Solomon T. 2010. Clinical features, diagnosis, and management of enterovirus 71. Lancet Neurol 9:1097–1105. doi:10.1016/S1474-4422(10)70209-X. - DOI - PubMed

[2] Ooi MH, Wong SC, Lewthwaite P, Cardosa MJ, Solomon T. 2010. Clinical features, diagnosis, and management of enterovirus 71. Lancet Neurol 9:1097–1105. doi:10.1016/S1474-4422(10)70209-X. - DOI - PubMed

[3] Tapparel C, Siegrist F, Petty TJ, Kaiser L. 2013. Picornavirus and enterovirus diversity with associated human diseases. Infect Genet Evol 14:282–293. doi:10.1016/j.meegid.2012.10.016. - DOI - PubMed

[4] Tapparel C, Siegrist F, Petty TJ, Kaiser L. 2013. Picornavirus and enterovirus diversity with associated human diseases. Infect Genet Evol 14:282–293. doi:10.1016/j.meegid.2012.10.016. - DOI - PubMed

[5] Oberste MS, Peñaranda S, Maher K, Pallansch MA. 2004. Complete genome sequences of all members of the species human enterovirus A. J Gen Virol 85:1597–1607. doi:10.1099/vir.0.79789-0. - DOI - PubMed

[6] Oberste MS, Peñaranda S, Maher K, Pallansch MA. 2004. Complete genome sequences of all members of the species human enterovirus A. J Gen Virol 85:1597–1607. doi:10.1099/vir.0.79789-0. - DOI - PubMed

[7] Tee KK, Lam TT, Chan YF, Bible JM, Kamarulzaman A, Tong CY, Takebe Y, Pybus OG. 2010. Evolutionary genetics of human enterovirus 71: origin, population dynamics, natural selection, and seasonal periodicity of the VP1 gene. J Virol 84:3339–3350. doi:10.1128/JVI.01019-09. - DOI - PMC - PubMed

[8] Tee KK, Lam TT, Chan YF, Bible JM, Kamarulzaman A, Tong CY, Takebe Y, Pybus OG. 2010. Evolutionary genetics of human enterovirus 71: origin, population dynamics, natural selection, and seasonal periodicity of the VP1 gene. J Virol 84:3339–3350. doi:10.1128/JVI.01019-09. - DOI - PMC - PubMed

[9] Van der Sanden S, van der Avoort H, Lemey P, Uslu G, Koopmans M. 2010. Evolutionary trajectory of the VP1 gene of human enterovirus 71 genogroup B and C viruses. J Gen Virol 91:1949–1958. doi:10.1099/vir.0.019695-0. - DOI - PubMed

[10] Van der Sanden S, van der Avoort H, Lemey P, Uslu G, Koopmans M. 2010. Evolutionary trajectory of the VP1 gene of human enterovirus 71 genogroup B and C viruses. J Gen Virol 91:1949–1958. doi:10.1099/vir.0.019695-0. - DOI - PubMed

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Full-Genome Sequences of Seven Fatal Enterovirus 71 Strains Isolated in Shenzhen, China, in 2014

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Full-Genome Sequences of Seven Fatal Enterovirus 71 Strains Isolated in Shenzhen, China, in 2014

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