Three Dimensional Organization of the Nucleus: adding DNA sequences to the big picture

doi:10.1186/s13059-015-0751-9

Editorial

. 2015 Aug 29;16(1):181.

doi: 10.1186/s13059-015-0751-9.

Three Dimensional Organization of the Nucleus: adding DNA sequences to the big picture

David M Gilbert^{1

2}, Peter Fraser³

Affiliations

¹ Department of Biological Science, Florida State University, Tallahassee, FL, 32306-4295, USA. gilbert@bio.fsu.edu.
² Center for Genomics and Personalized Medicine, Florida State University, Tallahassee, FL, 32306-4295, USA. gilbert@bio.fsu.edu.
³ Nuclear Dynamics Programme, The Babraham Institute, Cambridge, CB22 3AT, UK. peter.fraser@babraham.ac.uk.

PMID: 26319739
PMCID: PMC4553008
DOI: 10.1186/s13059-015-0751-9

Editorial

Three Dimensional Organization of the Nucleus: adding DNA sequences to the big picture

David M Gilbert et al. Genome Biol. 2015.

. 2015 Aug 29;16(1):181.

doi: 10.1186/s13059-015-0751-9.

Authors

David M Gilbert^{1

2}, Peter Fraser³

Affiliations

¹ Department of Biological Science, Florida State University, Tallahassee, FL, 32306-4295, USA. gilbert@bio.fsu.edu.
² Center for Genomics and Personalized Medicine, Florida State University, Tallahassee, FL, 32306-4295, USA. gilbert@bio.fsu.edu.
³ Nuclear Dynamics Programme, The Babraham Institute, Cambridge, CB22 3AT, UK. peter.fraser@babraham.ac.uk.

PMID: 26319739
PMCID: PMC4553008
DOI: 10.1186/s13059-015-0751-9

No abstract available

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References

1. Volpi EV, Bridger JM. FISH glossary: an overview of the fluorescence in situ hybridization technique. Biotechniques. 2008;45:385–409. doi: 10.2144/000112811. - DOI - PubMed
1. Hughes JR, Roberts N, McGowan S, Hay D, Giannoulatou E, Lynch M, De Gobbi M, Taylor S, Gibbons R, Higgs DR. Analysis of hundreds of cis-regulatory landscapes at high resolution in a single, high-throughput experiment. Nat Genet. 2014;46:205–12. doi: 10.1038/ng.2871. - DOI - PubMed
1. Schoenfelder S, Furlan-Magaril M, Mifsud B, Tavares-Cadete F, Sugar R, Javierre B-M, Nagano T, Katsman Y, Sakthidevi M, Wingett SW, Dimitrova E, Dimond A, Edelman LB, Elderkin S, Tabbada K, Darbo E, Andrews S, Herman B, Higgs A, LeProust E, Osborne CS, Mitchell JA, Luscombe NM, Fraser P. The pluripotent regulatory circuitry connecting promoters to their long-range interacting elements. Genome Res. 2015;25:582–597. doi: 10.1101/gr.185272.114. - DOI - PMC - PubMed
1. Nora EP, Lajoie BR, Schulz EG, Giorgetti L, Okamoto I, Servant N, Piolot T, van Berkum NL, Meisig J, Sedat J, Gribnau J, Barillot E, Blüthgen N, Dekker J, Heard E. Spatial partitioning of the regulatory landscape of the X-inactivation centre. Nature. 2012;485:381–5. doi: 10.1038/nature11049. - DOI - PMC - PubMed
1. Sexton T, Yaffe E, Kenigsberg E, Bantignies F, Leblanc B, Hoichman M, Parrinello H, Tanay A, Cavalli G. Three-dimensional folding and functional organization principles of the Drosophila genome. Cell. 2012;148:458–72. doi: 10.1016/j.cell.2012.01.010. - DOI - PubMed

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[1] Volpi EV, Bridger JM. FISH glossary: an overview of the fluorescence in situ hybridization technique. Biotechniques. 2008;45:385–409. doi: 10.2144/000112811. - DOI - PubMed

[2] Volpi EV, Bridger JM. FISH glossary: an overview of the fluorescence in situ hybridization technique. Biotechniques. 2008;45:385–409. doi: 10.2144/000112811. - DOI - PubMed

[3] Hughes JR, Roberts N, McGowan S, Hay D, Giannoulatou E, Lynch M, De Gobbi M, Taylor S, Gibbons R, Higgs DR. Analysis of hundreds of cis-regulatory landscapes at high resolution in a single, high-throughput experiment. Nat Genet. 2014;46:205–12. doi: 10.1038/ng.2871. - DOI - PubMed

[4] Hughes JR, Roberts N, McGowan S, Hay D, Giannoulatou E, Lynch M, De Gobbi M, Taylor S, Gibbons R, Higgs DR. Analysis of hundreds of cis-regulatory landscapes at high resolution in a single, high-throughput experiment. Nat Genet. 2014;46:205–12. doi: 10.1038/ng.2871. - DOI - PubMed

[5] Schoenfelder S, Furlan-Magaril M, Mifsud B, Tavares-Cadete F, Sugar R, Javierre B-M, Nagano T, Katsman Y, Sakthidevi M, Wingett SW, Dimitrova E, Dimond A, Edelman LB, Elderkin S, Tabbada K, Darbo E, Andrews S, Herman B, Higgs A, LeProust E, Osborne CS, Mitchell JA, Luscombe NM, Fraser P. The pluripotent regulatory circuitry connecting promoters to their long-range interacting elements. Genome Res. 2015;25:582–597. doi: 10.1101/gr.185272.114. - DOI - PMC - PubMed

[6] Schoenfelder S, Furlan-Magaril M, Mifsud B, Tavares-Cadete F, Sugar R, Javierre B-M, Nagano T, Katsman Y, Sakthidevi M, Wingett SW, Dimitrova E, Dimond A, Edelman LB, Elderkin S, Tabbada K, Darbo E, Andrews S, Herman B, Higgs A, LeProust E, Osborne CS, Mitchell JA, Luscombe NM, Fraser P. The pluripotent regulatory circuitry connecting promoters to their long-range interacting elements. Genome Res. 2015;25:582–597. doi: 10.1101/gr.185272.114. - DOI - PMC - PubMed

[7] Nora EP, Lajoie BR, Schulz EG, Giorgetti L, Okamoto I, Servant N, Piolot T, van Berkum NL, Meisig J, Sedat J, Gribnau J, Barillot E, Blüthgen N, Dekker J, Heard E. Spatial partitioning of the regulatory landscape of the X-inactivation centre. Nature. 2012;485:381–5. doi: 10.1038/nature11049. - DOI - PMC - PubMed

[8] Nora EP, Lajoie BR, Schulz EG, Giorgetti L, Okamoto I, Servant N, Piolot T, van Berkum NL, Meisig J, Sedat J, Gribnau J, Barillot E, Blüthgen N, Dekker J, Heard E. Spatial partitioning of the regulatory landscape of the X-inactivation centre. Nature. 2012;485:381–5. doi: 10.1038/nature11049. - DOI - PMC - PubMed

[9] Sexton T, Yaffe E, Kenigsberg E, Bantignies F, Leblanc B, Hoichman M, Parrinello H, Tanay A, Cavalli G. Three-dimensional folding and functional organization principles of the Drosophila genome. Cell. 2012;148:458–72. doi: 10.1016/j.cell.2012.01.010. - DOI - PubMed

[10] Sexton T, Yaffe E, Kenigsberg E, Bantignies F, Leblanc B, Hoichman M, Parrinello H, Tanay A, Cavalli G. Three-dimensional folding and functional organization principles of the Drosophila genome. Cell. 2012;148:458–72. doi: 10.1016/j.cell.2012.01.010. - DOI - PubMed

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Three Dimensional Organization of the Nucleus: adding DNA sequences to the big picture

Affiliations

Three Dimensional Organization of the Nucleus: adding DNA sequences to the big picture

Authors

Affiliations

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