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Review
. 2014 Oct 15;463(2):177-89.
doi: 10.1042/BJ20140772.

Redox proteomics analysis to decipher the neurobiology of Alzheimer-like neurodegeneration: overlaps in Down's syndrome and Alzheimer's disease brain

Affiliations
Review

Redox proteomics analysis to decipher the neurobiology of Alzheimer-like neurodegeneration: overlaps in Down's syndrome and Alzheimer's disease brain

D Allan Butterfield et al. Biochem J. .

Abstract

Accumulation of oxidative damage is a common feature of neurodegeneration that, together with mitochondrial dysfunction, point to the fact that reactive oxygen species are major contributors to loss of neuronal homoeostasis and cell death. Among several targets of oxidative stress, free-radical-mediated damage to proteins is particularly important in aging and age-related neurodegenerative diseases. In the majority of cases, oxidative-stress-mediated post-translational modifications cause non-reversible modifications of protein structure that consistently lead to impaired function. Redox proteomics methods are powerful tools to unravel the complexity of neurodegeneration, by identifying brain proteins with oxidative post-translational modifications that are detrimental for protein function. The present review discusses the current literature showing evidence of impaired pathways linked to oxidative stress possibly involved in the neurodegenerative process leading to the development of Alzheimer-like dementia. In particular, we focus attention on dysregulated pathways that underlie neurodegeneration in both aging adults with DS (Down's syndrome) and AD (Alzheimer's disease). Since AD pathology is age-dependent in DS and shows similarities with AD, identification of common oxidized proteins by redox proteomics in both DS and AD can improve our understanding of the overlapping mechanisms that lead from normal aging to development of AD. The most relevant proteomics findings highlight that disturbance of protein homoeostasis and energy production are central mechanisms of neurodegeneration and overlap in aging DS and AD. Protein oxidation affects crucial intracellular functions and may be considered a 'leitmotif' of degenerating neurons. Therapeutic strategies aimed at preventing/reducing multiple components of processes leading to accumulation of oxidative damage will be critical in future studies.

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Figures

Figure 1
Figure 1. ROS-induced protein modification
ROS/RNS are highly reactive species that can irreversibly modify proteins. Among different types of protein oxidation, protein nitration, protein carbonylation and protein buond to alkenals are the most commonly assayed. These type of modifications are crucially involved in both aging and neurodegeneration.
Figure 2
Figure 2. Redox proteomics
The workflow of a redox proteomics analysis is showed in four principal steps. 1. isoelectrofocusing point. 2. Second dimension electrophoresis. 3 Protein of interest, selected by 2D image analysis software, are excised from the gel and digested with trypsin. 4. Mass Spectrometry analysis leads to protein identity.
Figure 3
Figure 3. Energy metabolism failure
Increased protein oxidation of energy metabolic enzymes. Specifically, the oxidation of glycolytic enzymes, highlighted in blue, and TCA enzymes lead to reduced activity which culminates in reduced glucose metabolism and decreased synthesis of ATP.
Figure 4
Figure 4. Reduced protein degradation
Impairment of protein degradation machinery. Redox proteomics studies identified oxidatively modified proteins in DS and AD brain that are members of the protein degradative system. Specifically, UCHL1 is involved in the proteasome pathway; GRP78 and HSC71 in unfolded protein response (UPR) and GFAP in autophagy. Dysfunction of all these three processes contributes significantly to accumulation of oxidized/misfolded proteins
Figure 5
Figure 5. Protein oxidation overlap in DS and AD neuropathology
Identification of oxidized proteins in AD and DS brain suggest common dysregulated processes with oxidative stress being a “leitmotif.” These findings support a molecular link among protein oxidation/aggregation, the integrity of protein quality control (UPS and autophagy), dysfunction of energy metabolism and neurodegeneration.

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