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. 2014 Jun;9(6):784-93.
doi: 10.1097/JTO.0000000000000165.

GATA2 is epigenetically repressed in human and mouse lung tumors and is not requisite for survival of KRAS mutant lung cancer

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GATA2 is epigenetically repressed in human and mouse lung tumors and is not requisite for survival of KRAS mutant lung cancer

Mathewos Tessema et al. J Thorac Oncol. 2014 Jun.

Abstract

Introduction: GATA2 was recently described as a critical survival factor and therapeutic target for KRAS mutant non-small-cell lung cancer (NSCLC). However, whether this role is affected by epigenetic repression of GATA2 in lung cancer is unclear.

Methods: GATA2 expression and promoter CpG island methylation were evaluated using human and mouse NSCLC cell lines and tumor-normal pairs. In vitro assays were used to study GATA2 repression on cell survival and during tobacco carcinogen-induced transformation.

Results: GATA2 expression in KRAS wild-type (n = 15) and mutant (n = 10) NSCLC cell lines and primary lung tumors (n = 24) was significantly lower, 1.3- to 33.6-fold (p = 2.2 × 10(9)), compared with corresponding normal lung. GATA2 promoter was unmethylated in normal lung (0 of 10) but frequently methylated in lung tumors (96%, 159 of 165) and NSCLC cell lines (97%, 30 of 31). This highly prevalent aberrant methylation was independently validated using The Cancer Genome Atlas data for 369 NSCLC tumor-normal pairs. In vitro studies using an established carcinogen-induced premalignancy model revealed that GATA2 expression was initially repressed by chromatin remodeling followed by cytosine methylation during transformation. Similarly, expression of GATA2 in NNK-induced mouse lung tumors (n = 6) and cell lines (n = 5) was fivefold and 100-fold lower, respectively, than normal mouse lung. Finally, siRNA-mediated knockdown of GATA2 in KRAS mutant (human [n = 4] and murine [n = 5]) and wild-type (human [n = 4]) NSCLC cell lines showed that further reduction of expression (up to 95%) does not induce cell death.

Conclusion: GATA2 is epigenetically repressed in human and mouse lung tumors and its further inhibition is not a valid therapeutic strategy for KRAS mutant lung cancer.

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Figures

Figure 1
Figure 1. GATA2 expression is significantly reduced in lung cancer and does not provide survival advantage to lung cancer cells
(A) A schematic representation of the three transcript variants of GATA2. Expression of total GATA2 in (B) tumor-normal pairs and (C) KRAS wild-type and mutant NSCLC cell lines was compared using a TaqMan assay that detects all transcripts. Transient knockdown of GATA2 in KRAS wild-type (D) and mutant (E) NSCLC cell lines does not increase cell death (F–G).
Figure 2
Figure 2. Aberrant methylation of GATA2 is common in lung cancer and occurs early during lung carcinogenesis
(A) Combined Bisulfite Modification and Restriction Analysis (CoBRA) assay shows GATA2 promoter CpG island is not methylated (PCR products are not digested into smaller fragments by BstU1 enzyme) in NHBECs and PBMCs obtained from cancer-free donors (top panel), but methylated in most KRAS wild-type and mutant NSCLC cell lines (bottom panel). (B) The degree of methylation across the GATA2 promoter could be estimated based on the proportion of undigested and digested fragments. Top panel: Among the NSCLC cell lines evaluated, GATA2 was not methylated in SKMES1 (0%), partially methylated in SW900 (~25%), HCC4006 (~50%), and H1975 (~75%), and completely methylated (100%) in H23 and the remaining cell lines as also shown in the bottom panel of Figure 2A. Bottom panel: The higher proportion of undigested bands in the BstU1+ lanes in the DAC than TSA and Vehicle (Cont) treated KRAS wild-type (H1838) and mutant (H358) NSCLC cell lines indicates demethylation of GATA2 by DAC treatment. (C) The CoBRA primers that amplify bisulfite modified GATA2 promoter CpG island regardless of its methylation were used as modified DNA specific PCR (ModSP). Methylation Specific PCR (MSP) assays using primers that specifically amplify only the methylated promoter show that GATA2 is unmethylated in NHBECs and HBECs (no band). However, methylation was detected in HBEC2 after 12 weeks of exposure to the tobacco carcinogens MNU and BPDE and in the transformed HBEC1, 2, and 14 that were exposed to these carcinogens for 12 weeks and further selected for growth in soft agar. Quantitative methylation data from HM450K arrays show increased methylation of eight probes located within the GATA2 promoter CpG island during transformation of (D) HBEC2 and (E) HBEC14. These eight probes were not methylated in normal lung but aberrantly hypermethylated in nearly all lung tumors.
Figure 3
Figure 3. Epigenetic repression of GATA2 in early lung carcinogenesis is mediated by chromatin modification and progresses to a more stable repression by adding cytosine-DNA methylation upon transformation
(A) GATA2 expression responds better to the HDAC inhibitor TSA, while transformed HBECs (B), KRAS wild-type (C) and mutant (D) NSCLC cell lines show better response to the DNMTs inhibitor DAC. (E) Chromatin marks for transcriptional repression were increased during transformation of HBEC2 and the highest repression marks were seen in NSCLC cell lines, Calu6 (KRAS mutant) and H1975 (KRAS wild-type).

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