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Review
. 2014 Feb;21(2):206-15.
doi: 10.1038/cdd.2013.153. Epub 2013 Oct 25.

The rheostat in the membrane: BCL-2 family proteins and apoptosis

Affiliations
Review

The rheostat in the membrane: BCL-2 family proteins and apoptosis

N Volkmann et al. Cell Death Differ. 2014 Feb.

Abstract

Apoptosis, a mechanism for programmed cell death, has key roles in human health and disease. Many signals for cellular life and death are regulated by the BCL-2 family proteins and converge at mitochondria, where cell fate is ultimately decided. The BCL-2 family includes both pro-life (e.g. BCL-XL) and pro-death (e.g. BAX, BAK) proteins. Previously, it was thought that a balance between these opposing proteins, like a simple 'rheostat', could control the sensitivity of cells to apoptotic stresses. Later, this rheostat concept had to be extended, when it became clear that BCL-2 family proteins regulate each other through a complex network of bimolecular interactions, some transient and some relatively stable. Now, studies have shown that the apoptotic circuitry is even more sophisticated, in that BCL-2 family interactions are spatially dynamic, even in nonapoptotic cells. For example, BAX and BCL-XL can shuttle between the cytoplasm and the mitochondrial outer membrane (MOM). Upstream signaling pathways can regulate the cytoplasmic-MOM equilibrium of BAX and thereby adjust the sensitivity of cells to apoptotic stimuli. Thus, we can view the MOM as the central locale of a dynamic life-death rheostat. BAX invariably forms extensive homo-oligomers after activation in membranes. However, recent studies, showing that activated BAX monomers determine the kinetics of MOM permeabilization (MOMP), perturb the lipid bilayer and form nanometer size pores, pose questions about the role of the oligomerization. Other lingering questions concern the molecular mechanisms of BAX redistribution between MOM and cytoplasm and the details of BAX/BAK-membrane assemblies. Future studies need to delineate how BCL-2 family proteins regulate MOMP, in concert with auxiliary MOM proteins, in a dynamic membrane environment. Technologies aimed at elucidating the structure and function of the full-length proteins in membranes are needed to illuminate some of these critical issues.

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Figures

Figure 1
Figure 1
BCL-2 homology and solution NMR structures of BCL-XL, BAX and BID., The proteins contain up to four BH domains and a 20-residue hydrophobic C terminus. The C terminus of BCL-XL was truncated to promote solubility. The BID caspase-8 cleavage site (Asp60) is denoted by a gold sphere. BH3 domains are shown in pink, hydrophobic C termini in blue and central membrane-inserting helices in red
Figure 2
Figure 2
Three-dimensional cryo-EM reconstructions of BAX nanodisc assemblies. (a) Model of nanodisc derived from the three-dimensional density. The stabilizing peptide belt is shown as cartoon representation in orange. The lipid bilayer is shown in yellow (polar headgroups) and gray (hydrocarbon tails). (bd) 3D reconstructions of the nanodiscs (ND) are shown as gray surface representations. The contour level was chosen to accommodate the length of the protein belt in the circumference of the density. Two orthogonal views are shown; the bottom row shows the density cut open at the center (b) Empty nanodiscs. (c). Nanodisc in the presence of BID BH3 peptides. Note the additional thickness if compared with (b), attributable to the density of BID BH3 peptides (unknown stoichiometry) bound to the nanodisc. The increase in thickness is mapped onto the cut-open view (bottom row) in pink. The binding of BID BH3 to nanodiscs was independently verified with gel electrophoresis and fluorescence tagging. (d) Nanodisc in the presence of BAX and BID BH3 peptides showing significant distortions of the bilayer and a pronounced hole in the nanodisc. Binding of single BAX monomers was independently verified using gel electrophoresis and fluorescence tagging
Figure 3
Figure 3
BAX monomers unfold when inserted into the membrane bilayer. (a) Tentative model of membrane-inserted BAX with BID BH3 peptide derived from the cryo-EM data. The N- and C termini are marked. The helices are represented as cylinders; the molecular surface is shown as a transparent surface. The numbers correspond to the numbering of the helices following the sequence. Helices α1, α5, α6 and α9 are modeled to insert into the membrane and to line the pore. This configuration would be the ‘best-case scenario' for pore lining and minimizing the material that needs to be placed on the surface. The top view is perpendicular to the membrane plane and the bottom view is parallel to the membrane. (b) BAX/BID peptide (blue surface) modeled onto the nanodisc (yellow) containing a 3.5-nm hole. There is only enough space for a single BAX molecule and there are not enough helices inserted for lining the entire pore. (c) Cryo-EM reconstruction of nanodisc in the presence of BAX and BID peptide (white surface) with the structure of cytochrome c (blue surface) modeled into the hole. The hole is big enough to allow cytochrome c to pass. (d) Densities calculated at 2.5-nm resolution from a model of nanodisc with a 3.5-nm hole (yellow, top row), the model shown in (b) (blue surface, center row) and a model of a nanodisc with 3.5-nm hole with the globular solution structure of BAX attached to the surface. The view in the first column is parallel to the membrane plane and the view in the second column is tilted by 45° downwards around the horizontal axis
Figure 4
Figure 4
MOM vesicles and mitochondria display similar biphasic permeabilization kinetics upon treatment with recombinant BAX activated by cleaved BID (tBID). (a) Purified MOM vesicles were pre-loaded with fluorescein-dextrans and dextran content was measured by fluorescence intensity in the presence of anti-fluorescein quenching antibody. (b) Permeabilization of whole mitochondria was measured as the rate of oxygen consumption driven by exogenous cytochrome c. Inset shows total oxygen; main curves are the derivatives of oxygen traces with respect to time. Note that in both cases, there is an initial lag phase (absent in liposomes; not shown) followed by an exponential decay phase
Figure 5
Figure 5
Kinetic analysis shows that BAX-induced permeabilization of MOM vesicles involves the assembly of a non-BAX oligomeric catalyst that facilitates BAX-induced pore formation. (a) MOMP reaction diagram inferred from kinetic analysis. Measured MOMP kinetics as shown in Figure 5 are most simply explained by the existence of two coupled reaction tiers: (i) BAX-induced formation of an oligomeric catalyst M*n, with rate k1 and n≥12, which occurs during the first kinetic phase (lag), shown in the gray box and (ii) BAX-induced pore formation, with rate k2, which occurs during the second kinetic phase (permeabilization). (b) The measured kinetic constants k1 and k2 depend linearly on BAX concentration, implying that BAX acts noncooperatively and thus that the oligomeric catalyst M is distinct from BAX

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