RNA polymerase I structure and transcription regulation
- PMID: 24153182
- DOI: 10.1038/nature12712
RNA polymerase I structure and transcription regulation
Abstract
Transcription of ribosomal RNA by RNA polymerase (Pol) I initiates ribosome biogenesis and regulates eukaryotic cell growth. The crystal structure of Pol I from the yeast Saccharomyces cerevisiae at 2.8 Å resolution reveals all 14 subunits of the 590-kilodalton enzyme, and shows differences to Pol II. An 'expander' element occupies the DNA template site and stabilizes an expanded active centre cleft with an unwound bridge helix. A 'connector' element invades the cleft of an adjacent polymerase and stabilizes an inactive polymerase dimer. The connector and expander must detach during Pol I activation to enable transcription initiation and cleft contraction by convergent movement of the polymerase 'core' and 'shelf' modules. Conversion between an inactive expanded and an active contracted polymerase state may generally underlie transcription. Regulatory factors can modulate the core-shelf interface that includes a 'composite' active site for RNA chain initiation, elongation, proofreading and termination.
Comment in
-
Structural biology: Pivotal findings for a transcription machine.Nature. 2013 Oct 31;502(7473):629-30. doi: 10.1038/nature12700. Epub 2013 Oct 23. Nature. 2013. PMID: 24153180 Free PMC article.
Similar articles
-
An alternative RNA polymerase I structure reveals a dimer hinge.Acta Crystallogr D Biol Crystallogr. 2015 Sep;71(Pt 9):1850-5. doi: 10.1107/S1399004715012651. Epub 2015 Aug 25. Acta Crystallogr D Biol Crystallogr. 2015. PMID: 26327374
-
Crystal structure of the 14-subunit RNA polymerase I.Nature. 2013 Oct 31;502(7473):644-9. doi: 10.1038/nature12636. Epub 2013 Oct 23. Nature. 2013. PMID: 24153184
-
Structure of RNA polymerase I transcribing ribosomal DNA genes.Nature. 2016 Dec 22;540(7634):607-610. doi: 10.1038/nature20561. Epub 2016 Nov 14. Nature. 2016. PMID: 27842382
-
Dynamics of the RNA polymerase I TFIIF/TFIIE-like subcomplex: a mini-review.Biochem Soc Trans. 2020 Oct 30;48(5):1917-1927. doi: 10.1042/BST20190848. Biochem Soc Trans. 2020. PMID: 32915199 Free PMC article. Review.
-
Features of yeast RNA polymerase I with special consideration of the lobe binding subunits.Biol Chem. 2023 Oct 13;404(11-12):979-1002. doi: 10.1515/hsz-2023-0184. Print 2023 Oct 26. Biol Chem. 2023. PMID: 37823775 Review.
Cited by
-
Acrofacial Dysostosis, Cincinnati Type, a Mandibulofacial Dysostosis Syndrome with Limb Anomalies, Is Caused by POLR1A Dysfunction.Am J Hum Genet. 2015 May 7;96(5):765-74. doi: 10.1016/j.ajhg.2015.03.011. Epub 2015 Apr 23. Am J Hum Genet. 2015. PMID: 25913037 Free PMC article.
-
Eukaryotic RNA Polymerases: The Many Ways to Transcribe a Gene.Front Mol Biosci. 2021 Apr 21;8:663209. doi: 10.3389/fmolb.2021.663209. eCollection 2021. Front Mol Biosci. 2021. PMID: 33968992 Free PMC article. Review.
-
The N-terminal domain of the A12.2 subunit stimulates RNA polymerase I transcription elongation.Biophys J. 2021 May 18;120(10):1883-1893. doi: 10.1016/j.bpj.2021.03.007. Epub 2021 Mar 16. Biophys J. 2021. PMID: 33737158 Free PMC article.
-
Emerging Roles for Maf1 beyond the Regulation of RNA Polymerase III Activity.J Mol Biol. 2015 Aug 14;427(16):2577-85. doi: 10.1016/j.jmb.2015.06.022. Epub 2015 Jul 11. J Mol Biol. 2015. PMID: 26173035 Free PMC article. Review.
-
Ribosome assembly coming into focus.Nat Rev Mol Cell Biol. 2019 Feb;20(2):116-131. doi: 10.1038/s41580-018-0078-y. Nat Rev Mol Cell Biol. 2019. PMID: 30467428 Free PMC article. Review.
References
Publication types
MeSH terms
Substances
Associated data
- Actions
LinkOut - more resources
Full Text Sources
Other Literature Sources
Molecular Biology Databases