End-to-end transcription of an Alu family repeat. A new type of polymerase-III-dependent terminator and its evolutionary implication
- PMID: 2411938
- DOI: 10.1016/0022-2836(85)90039-7
End-to-end transcription of an Alu family repeat. A new type of polymerase-III-dependent terminator and its evolutionary implication
Abstract
Four or more consecutive thymidine residues on the non-template strand and G + C-richness of flanking DNA are the two necessary characteristics of efficient RNA polymerase-III-dependent transcriptional terminators. We have identified, from the study of in vitro transcription of a human Alu family repeat, a new type of RNA polymerase-III-dependent transcriptional terminator. A 258 base-pair Alu repeat located on the 3' side of the human alpha 1 globin gene can be transcribed in a HeLa S-100 extract to generate three RNA species of lengths 404 to 408, 252 to 255 and 173 to 174 nucleotides, respectively. Kinetics, pulse-chase and RNA incubation experiments showed no significant internal processing of the longer transcripts into shorter ones. These data plus detailed RNA mapping demonstrated conclusively that the multiple Alu RNA species resulted from accurate initiation at the first base (5' end) of the repeat, and multiple termination downstream. The 3' end(s) of the major transcript (252 to 255 nucleotides) maps at the 3' end of the Alu repeat sequence where there are not four or more consecutive thymidine residues on the non-template strand. The functional domain of the terminator has been mapped to a 45 base-pair segment that includes 36 base-pairs of the 3' end sequence of the Alu repeat plus nine base-pairs downstream. The high efficiency of termination (greater than 90%), the lack of consecutive T residues, the richness in A + T content, and the proposed ability of the RNA to form an imperfect hairpin structure in the 3' region of the transcript, thus identify a new type of eukaryotic class III terminator. We compare the structure of this class III terminator with that of the bacterial rho-dependent terminator. We also discuss its implication in the mechanism(s) of amplification and dispersion of Alu sequences in the primate genomes.
Similar articles
-
The organization, structure, and in vitro transcription of Alu family RNA polymerase III transcription units in the human alpha-like globin gene cluster: precipitation of in vitro transcripts by lupus anti-La antibodies.J Mol Appl Genet. 1982;1(4):343-60. J Mol Appl Genet. 1982. PMID: 6286832
-
Competitive and cooperative functioning of the anterior and posterior promoter elements of an Alu family repeat.Mol Cell Biol. 1986 Jun;6(6):2041-52. doi: 10.1128/mcb.6.6.2041-2052.1986. Mol Cell Biol. 1986. PMID: 3023916 Free PMC article.
-
RNA polymerase III promoter and terminator elements affect Alu RNA expression.Nucleic Acids Res. 1995 May 25;23(10):1750-7. doi: 10.1093/nar/23.10.1750. Nucleic Acids Res. 1995. PMID: 7540287 Free PMC article.
-
The Alu family of dispersed repetitive sequences.Science. 1982 Jun 4;216(4550):1065-70. doi: 10.1126/science.6281889. Science. 1982. PMID: 6281889 Review.
-
Transcription by RNA polymerase III.Curr Top Dev Biol. 1983;18:59-88. doi: 10.1016/s0070-2153(08)60579-7. Curr Top Dev Biol. 1983. PMID: 6340979 Review. No abstract available.
Cited by
-
Sequential insertion of Alu family repeats into specific genomic sites of higher primates.Proc Natl Acad Sci U S A. 1993 Aug 1;90(15):7205-9. doi: 10.1073/pnas.90.15.7205. Proc Natl Acad Sci U S A. 1993. PMID: 8394013 Free PMC article.
-
Small cytoplasmic Ro RNA pseudogene and an Alu repeat in the human alpha-1 globin gene.Nucleic Acids Res. 1988 Jan 25;16(2):766. doi: 10.1093/nar/16.2.766. Nucleic Acids Res. 1988. PMID: 2448755 Free PMC article. No abstract available.
-
Unique sequence organization and erythroid cell-specific nuclear factor-binding of mammalian theta 1 globin promoters.Nucleic Acids Res. 1989 Jul 25;17(14):5687-700. doi: 10.1093/nar/17.14.5687. Nucleic Acids Res. 1989. PMID: 2569721 Free PMC article.
-
MicroRNA: Biogenesis, Function and Role in Cancer.Curr Genomics. 2010 Nov;11(7):537-61. doi: 10.2174/138920210793175895. Curr Genomics. 2010. PMID: 21532838 Free PMC article.
-
Multiple dispersed loci produce small cytoplasmic Alu RNA.Mol Cell Biol. 1993 Jul;13(7):4233-41. doi: 10.1128/mcb.13.7.4233-4241.1993. Mol Cell Biol. 1993. PMID: 7686619 Free PMC article.
Publication types
MeSH terms
Substances
Associated data
- Actions
- Actions
- Actions
- Actions
- Actions
- Actions
- Actions
Grants and funding
LinkOut - more resources
Full Text Sources
Molecular Biology Databases