From sequence and forces to structure, function, and evolution of intrinsically disordered proteins
- PMID: 24010708
- PMCID: PMC4704097
- DOI: 10.1016/j.str.2013.08.001
From sequence and forces to structure, function, and evolution of intrinsically disordered proteins
Abstract
Intrinsically disordered proteins (IDPs), which lack persistent structure, are a challenge to structural biology due to the inapplicability of standard methods for characterization of folded proteins as well as their deviation from the dominant structure/function paradigm. Their widespread presence and involvement in biological function, however, has spurred the growing acceptance of the importance of IDPs and the development of new tools for studying their structure, dynamics, and function. The interplay of folded and disordered domains or regions for function and the existence of a continuum of protein states with respect to conformational energetics, motional timescales, and compactness are shaping a unified understanding of structure-dynamics-disorder/function relationships. In the 20(th) anniversary of Structure, we provide a historical perspective on the investigation of IDPs and summarize the sequence features and physical forces that underlie their unique structural, functional, and evolutionary properties.
Copyright © 2013 Elsevier Ltd. All rights reserved.
Figures
Similar articles
-
Intrinsically Disordered Protein Ensembles Shape Evolutionary Rates Revealing Conformational Patterns.J Mol Biol. 2021 Feb 5;433(3):166751. doi: 10.1016/j.jmb.2020.166751. Epub 2020 Dec 11. J Mol Biol. 2021. PMID: 33310020
-
Sequence-to-Conformation Relationships of Disordered Regions Tethered to Folded Domains of Proteins.J Mol Biol. 2018 Aug 3;430(16):2403-2421. doi: 10.1016/j.jmb.2018.05.012. Epub 2018 May 12. J Mol Biol. 2018. PMID: 29763584
-
Do sequence neighbours of intrinsically disordered regions promote structural flexibility in intrinsically disordered proteins?J Struct Biol. 2020 Feb 1;209(2):107428. doi: 10.1016/j.jsb.2019.107428. Epub 2019 Nov 20. J Struct Biol. 2020. PMID: 31756456
-
Computer Simulations of Intrinsically Disordered Proteins.Annu Rev Phys Chem. 2017 May 5;68:117-134. doi: 10.1146/annurev-physchem-052516-050843. Epub 2017 Feb 6. Annu Rev Phys Chem. 2017. PMID: 28226222 Review.
-
On the Potential of Machine Learning to Examine the Relationship Between Sequence, Structure, Dynamics and Function of Intrinsically Disordered Proteins.J Mol Biol. 2021 Oct 1;433(20):167196. doi: 10.1016/j.jmb.2021.167196. Epub 2021 Aug 12. J Mol Biol. 2021. PMID: 34390736 Review.
Cited by
-
Intrinsically disordered regions are poised to act as sensors of cellular chemistry.Trends Biochem Sci. 2023 Dec;48(12):1019-1034. doi: 10.1016/j.tibs.2023.08.001. Epub 2023 Aug 31. Trends Biochem Sci. 2023. PMID: 37657994 Free PMC article. Review.
-
Understanding the evolutionary trend of intrinsically structural disorders in cancer relevant proteins as probed by Shannon entropy scoring and structure network analysis.BMC Bioinformatics. 2019 Feb 4;19(Suppl 13):549. doi: 10.1186/s12859-018-2552-0. BMC Bioinformatics. 2019. PMID: 30717651 Free PMC article.
-
CXXC5 as an unmethylated CpG dinucleotide binding protein contributes to estrogen-mediated cellular proliferation.Sci Rep. 2020 Apr 6;10(1):5971. doi: 10.1038/s41598-020-62912-0. Sci Rep. 2020. PMID: 32249801 Free PMC article.
-
Polymorphism in merozoite surface protein-7E of Plasmodium vivax in Thailand: Natural selection related to protein secondary structure.PLoS One. 2018 May 2;13(5):e0196765. doi: 10.1371/journal.pone.0196765. eCollection 2018. PLoS One. 2018. PMID: 29718980 Free PMC article.
-
Classification of intrinsically disordered regions and proteins.Chem Rev. 2014 Jul 9;114(13):6589-631. doi: 10.1021/cr400525m. Epub 2014 Apr 29. Chem Rev. 2014. PMID: 24773235 Free PMC article. Review. No abstract available.
References
-
- Andrew CD, Warwicker J, Jones GR, Doig AJ. Effect of phosphorylation on alpha-helix stability as a function of position. Biochemistry. 2002;41(6):1897–1905. - PubMed
-
- Arif M, Senapati P, Shandilya J, Kundu TK. Protein lysine acetylation in cellular function and its role in cancer manifestation. Biochim Biophys Acta. 2010;1799(10–12):702–716. - PubMed
-
- Babu MM, Kriwacki RW, Pappu RV. Structural biology. Versatility from protein disorder. Science. 2012;337(6101):1460–1461. - PubMed
-
- Babu MM, van der Lee R, de Groot NS, Gsponer J. Intrinsically disordered proteins: regulation and disease. Curr Opin Struct Biol. 2011;21(3):432–440. - PubMed
Publication types
MeSH terms
Substances
Grants and funding
LinkOut - more resources
Full Text Sources
Other Literature Sources