The structure of a thermostable mutant of pro-papain reveals its activation mechanism
- PMID: 23151624
- DOI: 10.1107/S0907444912038607
The structure of a thermostable mutant of pro-papain reveals its activation mechanism
Abstract
Papain is the archetype of a broad class of cysteine proteases (clan C1A) that contain a pro-peptide in the zymogen form which is required for correct folding and spatio-temporal regulation of proteolytic activity in the initial stages after expression. This study reports the X-ray structure of the zymogen of a thermostable mutant of papain at 2.6 Å resolution. The overall structure, in particular that of the mature part of the protease, is similar to those of other members of the family. The structure provides an explanation for the molecular basis of the maintenance of latency of the proteolytic activity of the zymogen by its pro-segment at neutral pH. The structural analysis, together with biochemical and biophysical studies, demonstrated that the pro-segment of the zymogen undergoes a rearrangement in the form of a structural loosening at acidic pH which triggers the proteolytic activation cascade. This study further explains the bimolecular stepwise autocatalytic activation mechanism by limited proteolysis of the zymogen of papain at the molecular level. The possible factors responsible for the higher thermal stability of the papain mutant have also been analyzed.
Similar articles
-
Mutation in the Pro-Peptide Region of a Cysteine Protease Leads to Altered Activity and Specificity-A Structural and Biochemical Approach.PLoS One. 2016 Jun 28;11(6):e0158024. doi: 10.1371/journal.pone.0158024. eCollection 2016. PLoS One. 2016. PMID: 27352302 Free PMC article.
-
Crystal structure of an activation intermediate of cathepsin E.J Mol Biol. 2004 Sep 17;342(3):889-99. doi: 10.1016/j.jmb.2004.07.073. J Mol Biol. 2004. PMID: 15342244
-
C-Terminal extension of a plant cysteine protease modulates proteolytic activity through a partial inhibitory mechanism.FEBS J. 2011 Sep;278(17):3012-24. doi: 10.1111/j.1742-4658.2011.08221.x. Epub 2011 Jul 18. FEBS J. 2011. PMID: 21707922
-
Molecular mechanisms for the conversion of zymogens to active proteolytic enzymes.Protein Sci. 1998 Apr;7(4):815-36. doi: 10.1002/pro.5560070401. Protein Sci. 1998. PMID: 9568890 Free PMC article. Review.
-
Proregion structure of members of the papain superfamily. Mode of inhibition of enzymatic activity.Biochimie. 1997 Nov;79(11):645-52. doi: 10.1016/s0300-9084(97)83497-9. Biochimie. 1997. PMID: 9479446 Review.
Cited by
-
Extracellular proteolytic cascade in tomato activates immune protease Rcr3.Proc Natl Acad Sci U S A. 2020 Jul 21;117(29):17409-17417. doi: 10.1073/pnas.1921101117. Epub 2020 Jul 2. Proc Natl Acad Sci U S A. 2020. PMID: 32616567 Free PMC article.
-
Cysteine Protease Profiles of the Medicinal Plant Calotropis procera R. Br. revealed by de novo transcriptome analysis.PLoS One. 2015 Mar 18;10(3):e0119328. doi: 10.1371/journal.pone.0119328. eCollection 2015. PLoS One. 2015. PMID: 25786229 Free PMC article.
-
Characterization and molecular docking study of cathepsin L inhibitory peptides (SnuCalCpIs) from Calotropis procera R. Br.Sci Rep. 2022 Apr 6;12(1):5825. doi: 10.1038/s41598-022-09854-x. Sci Rep. 2022. PMID: 35388095 Free PMC article.
-
Structures of apo Cas12a and its complex with crRNA and DNA reveal the dynamics of ternary complex formation and target DNA cleavage.PLoS Biol. 2023 Mar 14;21(3):e3002023. doi: 10.1371/journal.pbio.3002023. eCollection 2023 Mar. PLoS Biol. 2023. PMID: 36917574 Free PMC article.
-
Cwp84, a Clostridium difficile cysteine protease, exhibits conformational flexibility in the absence of its propeptide.Acta Crystallogr F Struct Biol Commun. 2015 Mar;71(Pt 3):295-303. doi: 10.1107/S2053230X15001065. Epub 2015 Feb 19. Acta Crystallogr F Struct Biol Commun. 2015. PMID: 25760704 Free PMC article.
Publication types
MeSH terms
Substances
LinkOut - more resources
Full Text Sources