Analysis of the Hox epigenetic code
- PMID: 22553504
- PMCID: PMC3341740
- DOI: 10.5306/wjco.v3.i4.48
Analysis of the Hox epigenetic code
Abstract
Archetypes of histone modifications associated with diverse chromosomal states that regulate access to DNA are leading the hypothesis of the histone code (or epigenetic code). However, it is still not evident how these post-translational modifications of histone tails lead to changes in chromatin structure. Histone modifications are able to activate and/or inactivate several genes and can be transmitted to next generation cells due to an epigenetic memory. The challenging issue is to identify or "decrypt" the code used to transmit these modifications to descent cells. Here, an attempt is made to describe how histone modifications operate as part of histone code that stipulates patterns of gene expression. This papers emphasizes particularly on the correlation between histone modifications and patterns of Hox gene expression in Caenorhabditis elegans. This work serves as an example to illustrate the power of the epigenetic machinery and its use in drug design and discovery.
Keywords: Epigenetic code; Histone code; Histone modifications; Hox gene expression.
Figures
Similar articles
-
The "Epigenetic Code Replication Machinery", ECREM: a promising drugable target of the epigenetic cell memory.Curr Med Chem. 2007;14(25):2629-41. doi: 10.2174/092986707782023244. Curr Med Chem. 2007. PMID: 17979715 Review.
-
How does the histone code work?Biochem Cell Biol. 2005 Aug;83(4):468-76. doi: 10.1139/o05-137. Biochem Cell Biol. 2005. PMID: 16094450 Review.
-
Dynamic changes of histone H3 marks during Caenorhabditis elegans lifecycle revealed by middle-down proteomics.Proteomics. 2016 Feb;16(3):459-64. doi: 10.1002/pmic.201500285. Epub 2016 Jan 15. Proteomics. 2016. PMID: 26508544
-
Interplay between different epigenetic modifications and mechanisms.Adv Genet. 2010;70:101-41. doi: 10.1016/B978-0-12-380866-0.60005-8. Adv Genet. 2010. PMID: 20920747 Review.
-
Epigenetic Regulation of Chromatin in Prostate Cancer.Adv Exp Med Biol. 2019;1210:379-407. doi: 10.1007/978-3-030-32656-2_17. Adv Exp Med Biol. 2019. PMID: 31900918 Review.
Cited by
-
Methylation in HOX Clusters and Its Applications in Cancer Therapy.Cells. 2020 Jul 3;9(7):1613. doi: 10.3390/cells9071613. Cells. 2020. PMID: 32635388 Free PMC article. Review.
-
HOX genes in stem cells: Maintaining cellular identity and regulation of differentiation.Front Cell Dev Biol. 2022 Sep 13;10:1002909. doi: 10.3389/fcell.2022.1002909. eCollection 2022. Front Cell Dev Biol. 2022. PMID: 36176275 Free PMC article. Review.
-
Homeobox genes gain trimethylation of histone H3 lysine 4 in glioblastoma tissue.Biosci Rep. 2016 Jun 17;36(3):e00347. doi: 10.1042/BSR20160028. Print 2016 Jul. Biosci Rep. 2016. PMID: 27160082 Free PMC article.
References
-
- Kornberg RD, Lorch Y. Twenty-five years of the nucleosome, fundamental particle of the eukaryote chromosome. Cell. 1999;98:285–294. - PubMed
-
- Luger K, Mäder AW, Richmond RK, Sargent DF, Richmond TJ. Crystal structure of the nucleosome core particle at 2.8 A resolution. Nature. 1997;389:251–260. - PubMed
-
- Kouzarides T. Chromatin modifications and their function. Cell. 2007;128:693–705. - PubMed
-
- Margueron R, Trojer P, Reinberg D. The key to development: interpreting the histone code? Curr Opin Genet Dev. 2005;15:163–176. - PubMed
LinkOut - more resources
Full Text Sources