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. 2012 Apr 1;72(7):1865-77.
doi: 10.1158/0008-5472.CAN-11-2663. Epub 2012 Feb 20.

miRNA signatures associate with pathogenesis and progression of osteosarcoma

Affiliations

miRNA signatures associate with pathogenesis and progression of osteosarcoma

Kevin B Jones et al. Cancer Res. .

Abstract

Osteosarcoma remains a leading cause of cancer death in adolescents. Treatment paradigms and survival rates have not improved in two decades. Driving the lack of therapeutic inroads, the molecular etiology of osteosarcoma remains elusive. MicroRNAs (miRNAs) have demonstrated far-reaching effects on the cellular biology of development and cancer. Their role in osteosarcomagenesis remains largely unexplored. Here we identify for the first time an miRNA signature reflecting the pathogenesis of osteosarcoma from surgically procured samples from human patients. The signature includes high expression of miR-181a,miR-181b, and miR-181c as well as reduced expression of miR-16, miR-29b, and miR-142-5p. We also demonstrate that miR-181b and miR-29b exhibit restricted expression to distinct cell populations in the tumor tissue. Further, higher expression of miR-27a and miR-181c* in pre-treatment biopsy samples characterized patients who developed clinical metastatic disease. In addition, higher expression of miR-451 and miR-15b in pre-treatment samples correlated with subsequent positive response to chemotherapy. In vitro and in vivo functional validation in osteosarcoma cell lines confirmed the tumor suppressive role of miR-16 and the pro-metastatic role of miR-27a. Furthermore, predicted target genes for miR-16 and miR-27a were confirmed as down-regulated by real-time PCR. Affymetrix array profiling of cDNAs from the osteosarcoma specimens and controls were interrogated according to predicted targets of miR-16, miR142-5p, miR-29b, miR-181a/b, and miR-27a. This analysis revealed positive and negative correlations highlighting pathways of known importance to osteosarcoma, as well as novel genes. Thus, our findings establish a miRNA signature associated with pathogenesis of osteosarcoma as well as critical pre-treatment biomarkers of metastasis and responsiveness to therapy.

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Conflict of interest statement

Conflict of Interest: The authors declare no competing financial interests in relation to the work described.

Figures

Figure 1
Figure 1
An miRNA expression signature for osteosarcoma. (A) Unsupervised clustering of miRNA expression profiling from 18 pre-treatment tumor total RNA obtained from conventional osteosarcomas in comparison to 12 normal bone tissues. (B) Quantitative (q)RT-PCR confirmed differential expression for a subset of control and osteosarcoma samples and a subset of highlighted miRNAs. (C) Unsupervised clustering of miRNA expression profiles from 30 pre-treatment tumor total RNA samples of varied histologic subtypes, demonstrating co-clustering.
Figure 2
Figure 2
Validation by in situ hybridization. Formalin-fixed, paraffin-embedded tissues from the same biopsies that rendered the total RNA samples were sectioned and stained with hematoxylin and eosin (A), or probed with anti-sense oligonucleotides against miR-181b (B) or miR-29b (C). The percent cells hybridizing to the tested probes were generated from counting 10 high powered fields (D). Samples with both miR-181 and miR-29b hybridization were subjected to cohybridization with differentially labeled detection systems, demonstrating little to no overlap in positive cells (miR-29b stained red in E and fluorescent green in F, miR-181 stained blue in E and fluorescent blue in F).
Figure 3
Figure 3
miRNA expression profiling identifies behavioral subgroups of osteosarcoma. (A) Unsupervised clustering according to expression of miRNAs differentially expressed in pre-treatment samples from osteosarcomas that present or develop clinical metastasis or remain clinical localized through treatment and follow-up. (B) Unsupervised hierarchical clustering of osteosarcomas according their pre-treatment expression of miRNAs that correlate by Spearman correlation coefficient with percent necrosis following neoadjuvant chemotherapy. (C) Unsupervised hierarchical clustering of osteosarcomas according their pre-treatment expression of miRNAs that correlate by Pearson correlation coefficient with percent necrosis following neoadjuvant chemotherapy.
Figure 4
Figure 4
Functional validation of miR-16 and miR-27a in the HOS osteosarcoma cell line. A. XTT assay demonstrates no significant proliferative effect of miR-16 overexpression by lentivirus, compared to scrambled miR control. B. Assessment of colony formation confirms tumor-suppressive role for miR-16. C. Apoptotic response following exposure to doxorubicin demonstrates a chemosensitizing role. D. HOS miR-16 or control cells were injected subcutaneously into the flanks of NOD-SCID mice; tumor volume (cm3) was assessed every week. E. Tumor mass (in grams) was measured at the end of the experiment. F. Representative tumor masses excised from mice. G. H&E staining and activated caspase-3 immunohistochemistry on paraffin-embedded sections of representative tumors (brown color indicates act. Casp3 positivity). H. Migration assay (wound-healing) of HOS-miR-27a or control cells monitored in serum free media for 8hrs. I. Matrigel invasion assay of HOS-miR27a and control cells monitored using Boyden chambers. J. HOS-miR-27a or control cells were injected intravenously into the tail vein of NOD/SCID mice and microscopic and macroscopic metastasis assessed at 6-weeks by GFP fluorescence in the lungs. K. Representative pictures of the forearms and tibias of the same animals. L-N. Quantification of the metastasis positive animals in the indicated organs.
Figure 5
Figure 5
Predicted targets respond to miR expression levels. A. HOS, KHOS, and SaOS-2 osteosarcoma cell lines stably transfected by lentivirus with an overexpression vector of miR-16 or scrambled miR control demonstrated reduced levels of TargetScan predicted target genes by qRT-PCR. B. Functional validation of miR-27a versus scrambled control miR in osteoblasts and osteosarcoma cell lines demonstrate dowregulation of TargetScan predicted target gene mRNAs, shown here by qRT-PCR. C. The Affymetrix array expression level of these same predicted miR-15/16 family targets are plotted against miR-15b levels by sample and each linear regression follows the expected correlation direction. D. Blindly ranked BCL2 protein levels ascertained by immunohistochemistry correlate even more strongly than transcript levels with miR-15b levels by specimen. E. This BCL2 immunohistochemical ranking also correlates with the predicted chemoresponsiveness of tumors.

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References

    1. Ottaviani G, Jaffe N. The epidemiology of osteosarcoma. Cancer Treat Res. 2009;152:3–13. - PubMed
    1. Gorlick R. Current concepts on the molecular biology of osteosarcoma. Cancer Treat Res. 2009;152:467–478. - PubMed
    1. Bacci G, Bertoni F, Longhi A, Ferrari S, Forni C, Biagini R, et al. Neoadjuvant chemotherapy for high-grade central osteosarcoma of the extremity. Histologic response to preoperative chemotherapy correlates with histologic subtype of the tumor. Cancer. 2003;97:3068–3075. - PubMed
    1. Lewis BP, Burge CB, Bartel DP. Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets. Cell. 2005;120:15–20. - PubMed
    1. Croce CM. Causes and consequences of microRNA dysregulation in cancer. Nat Rev Genet. 2009;10:704–714. - PMC - PubMed

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