Solvent denaturation and stabilization of globular proteins
- PMID: 2043635
- DOI: 10.1021/bi00238a023
Solvent denaturation and stabilization of globular proteins
Abstract
Statistical thermodynamic theory has recently been developed to account for the stabilities of globular proteins. Here we extend that work to predict the effects of solvents on protein stability. Folding is assumed to be driven by solvophobic interactions and opposed by conformational entropy. The solvent dependence of the solvophobic interactions is taken from transfer experiments of Nozaki and Tanford on amino acids into aqueous solutions of urea or guanidine hydrochloride (GuHCl). On the basis of the assumption of two pathways involving collapse and formation of a core, the theory predicts that increasing denaturant should lead to a two-state denaturation transition (i.e., there is a stable state along each path separated by a free energy barrier). The denaturation midpoint is predicted to occur at higher concentrations of urea than of GuHCl. At neutral pH, the radius of the solvent-denatured state should be much smaller than for a random-flight chain and increase with either denaturant concentration or number of polar residues in the chain. A question of interest is whether free energies of folding should depend linearly on denaturant, as is often assumed. The free energy is predicted to be linear for urea but to have some small curvature for GuHCl. Predicted slopes and exposed areas of the unfolded states are found to be in generally good agreement with experiments. We also discuss stabilizing solvents and compare thermal with solvent denaturation.
Similar articles
-
Thermal stabilities of globular proteins.Biochemistry. 1989 Jun 27;28(13):5439-49. doi: 10.1021/bi00439a019. Biochemistry. 1989. PMID: 2775715
-
Solvent denaturation of proteins and interpretations of the m value.Methods Enzymol. 2009;466:549-65. doi: 10.1016/S0076-6879(09)66023-7. Epub 2009 Nov 13. Methods Enzymol. 2009. PMID: 21609876
-
Thermodynamics and Kinetics of Single-Chain Monellin Folding with Structural Insights into Specific Collapse in the Denatured State Ensemble.J Mol Biol. 2018 Feb 16;430(4):465-478. doi: 10.1016/j.jmb.2017.09.009. Epub 2017 Sep 18. J Mol Biol. 2018. PMID: 28923469
-
Conformational stability of dimeric proteins: quantitative studies by equilibrium denaturation.Protein Sci. 1994 Dec;3(12):2167-74. doi: 10.1002/pro.5560031202. Protein Sci. 1994. PMID: 7756976 Free PMC article. Review.
-
Denatured states of proteins.Annu Rev Biochem. 1991;60:795-825. doi: 10.1146/annurev.bi.60.070191.004051. Annu Rev Biochem. 1991. PMID: 1883209 Review.
Cited by
-
Anion binding to the ubiquitin molecule.Protein Sci. 1998 Mar;7(3):689-97. doi: 10.1002/pro.5560070318. Protein Sci. 1998. PMID: 9541401 Free PMC article.
-
A Tale of Two Chains: Geometries of a Chain Model and Protein Native State Structures.Polymers (Basel). 2024 Feb 12;16(4):502. doi: 10.3390/polym16040502. Polymers (Basel). 2024. PMID: 38399880 Free PMC article.
-
Transition state in the folding of alpha-lactalbumin probed by the 6-120 disulfide bond.Protein Sci. 1998 Jul;7(7):1564-74. doi: 10.1002/pro.5560070710. Protein Sci. 1998. PMID: 9684889 Free PMC article.
-
Ligation alters the pathway of urea-induced denaturation of the catalytic trimer of Escherichia coli aspartate transcarbamylase.Protein Sci. 1994 Aug;3(8):1236-44. doi: 10.1002/pro.5560030809. Protein Sci. 1994. PMID: 7987218 Free PMC article.
-
Polar or apolar--the role of polarity for urea-induced protein denaturation.PLoS Comput Biol. 2008 Nov;4(11):e1000221. doi: 10.1371/journal.pcbi.1000221. Epub 2008 Nov 14. PLoS Comput Biol. 2008. PMID: 19008937 Free PMC article.
Publication types
MeSH terms
Substances
LinkOut - more resources
Other Literature Sources