Interaction networks: lessons from large-scale studies in yeast
- PMID: 19743423
- DOI: 10.1002/pmic.200900177
Interaction networks: lessons from large-scale studies in yeast
Abstract
Saccharomyces cerevisiae is the simplest eukaryotic model organism and has made countless contributions to cell biology. The ease with which it can be genetically manipulated has made it a favourite organism among technologists for developing methods for large-scale analysis based on reverse genetics. Consequently, more genomewide datasets describing aspects of gene and protein biology are available for yeast than for any other organism. This has led to the pioneering of many computational analysis techniques using yeast data. Here, we make a brief survey of yeast physical and genetic interaction networks, highlighting major experimental and computational achievements first described in this organism.
Similar articles
-
Transcriptional networks: reverse-engineering gene regulation on a global scale.Curr Opin Microbiol. 2004 Dec;7(6):638-46. doi: 10.1016/j.mib.2004.10.009. Curr Opin Microbiol. 2004. PMID: 15556037 Review.
-
Transcriptional regulatory networks in Saccharomyces cerevisiae.Science. 2002 Oct 25;298(5594):799-804. doi: 10.1126/science.1075090. Science. 2002. PMID: 12399584
-
AVID: an integrative framework for discovering functional relationships among proteins.BMC Bioinformatics. 2005 Jun 1;6:136. doi: 10.1186/1471-2105-6-136. BMC Bioinformatics. 2005. PMID: 15929793 Free PMC article.
-
Specificity and stability in topology of protein networks.Science. 2002 May 3;296(5569):910-3. doi: 10.1126/science.1065103. Science. 2002. PMID: 11988575
-
14-3-3 Proteins: insights from genome-wide studies in yeast.Genomics. 2009 Nov;94(5):287-93. doi: 10.1016/j.ygeno.2009.07.004. Epub 2009 Jul 23. Genomics. 2009. PMID: 19631734 Review.
Cited by
-
Protein function prediction: towards integration of similarity metrics.Curr Opin Struct Biol. 2011 Apr;21(2):180-8. doi: 10.1016/j.sbi.2011.02.001. Epub 2011 Feb 24. Curr Opin Struct Biol. 2011. PMID: 21353529 Free PMC article. Review.
-
The short-lived African turquoise killifish: an emerging experimental model for ageing.Dis Model Mech. 2016 Feb;9(2):115-29. doi: 10.1242/dmm.023226. Dis Model Mech. 2016. PMID: 26839399 Free PMC article. Review.
-
Experimental and computational analysis of a large protein network that controls fat storage reveals the design principles of a signaling network.PLoS Comput Biol. 2015 May 28;11(5):e1004264. doi: 10.1371/journal.pcbi.1004264. eCollection 2015 May. PLoS Comput Biol. 2015. PMID: 26020510 Free PMC article.
Publication types
MeSH terms
Substances
LinkOut - more resources
Full Text Sources
Molecular Biology Databases