doi: 10.1093/bioinformatics/btn484.
Epub 2008 Sep 17.
BEST: Bayesian estimation of species trees under the coalescent model
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- PMID: 18799483
- DOI: 10.1093/bioinformatics/btn484
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BEST: Bayesian estimation of species trees under the coalescent model
Bioinformatics.
.
Abstract
BEST implements a Bayesian hierarchical model to jointly estimate gene trees and the species tree from multilocus sequences. It provides a new option for estimating species phylogenies within the popular Bayesian phylogenetic program MrBayes. The technique of simulated annealing is adopted along with Metropolis coupling as performed in MrBayes to improve the convergence rate of the Markov Chain Monte Carlo algorithm.
Availability: http://www.stat.osu.edu/~dkp/BEST.
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