Molecular code for transmembrane-helix recognition by the Sec61 translocon
- PMID: 18075582
- DOI: 10.1038/nature06387
Molecular code for transmembrane-helix recognition by the Sec61 translocon
Abstract
Transmembrane alpha-helices in integral membrane proteins are recognized co-translationally and inserted into the membrane of the endoplasmic reticulum by the Sec61 translocon. A full quantitative description of this phenomenon, linking amino acid sequence to membrane insertion efficiency, is still lacking. Here, using in vitro translation of a model protein in the presence of dog pancreas rough microsomes to analyse a large number of systematically designed hydrophobic segments, we present a quantitative analysis of the position-dependent contribution of all 20 amino acids to membrane insertion efficiency, as well as of the effects of transmembrane segment length and flanking amino acids. The emerging picture of translocon-mediated transmembrane helix assembly is simple, with the critical sequence characteristics mirroring the physical properties of the lipid bilayer.
Similar articles
-
The positive inside rule is stronger when followed by a transmembrane helix.J Mol Biol. 2014 Aug 12;426(16):2982-91. doi: 10.1016/j.jmb.2014.06.002. Epub 2014 Jun 10. J Mol Biol. 2014. PMID: 24927974
-
Recognition of transmembrane helices by the endoplasmic reticulum translocon.Nature. 2005 Jan 27;433(7024):377-81. doi: 10.1038/nature03216. Nature. 2005. PMID: 15674282
-
Quantitative analysis of SecYEG-mediated insertion of transmembrane α-helices into the bacterial inner membrane.J Mol Biol. 2013 Aug 9;425(15):2813-22. doi: 10.1016/j.jmb.2013.04.025. Epub 2013 May 7. J Mol Biol. 2013. PMID: 23659793
-
Transmembrane helices before, during, and after insertion.Curr Opin Struct Biol. 2005 Aug;15(4):378-86. doi: 10.1016/j.sbi.2005.07.004. Curr Opin Struct Biol. 2005. PMID: 16043344 Review.
-
Membrane Protein Integration and Topogenesis at the ER.Protein J. 2019 Jun;38(3):306-316. doi: 10.1007/s10930-019-09827-6. Protein J. 2019. PMID: 30927129 Review.
Cited by
-
What do we know about the transient receptor potential vanilloid 2 (TRPV2) ion channel?FEBS J. 2013 Nov;280(21):5471-87. doi: 10.1111/febs.12302. Epub 2013 May 28. FEBS J. 2013. PMID: 23615321 Free PMC article. Review.
-
Dissecting stop transfer versus conservative sorting pathways for mitochondrial inner membrane proteins in vivo.J Biol Chem. 2013 Jan 18;288(3):1521-32. doi: 10.1074/jbc.M112.409748. Epub 2012 Nov 26. J Biol Chem. 2013. PMID: 23184936 Free PMC article.
-
Euglena's atypical respiratory chain adapts to the discoidal cristae and flexible metabolism.Nat Commun. 2024 Feb 22;15(1):1628. doi: 10.1038/s41467-024-46018-z. Nat Commun. 2024. PMID: 38388527 Free PMC article.
-
Positional editing of transmembrane domains during ion channel assembly.J Cell Sci. 2013 Jan 15;126(Pt 2):464-72. doi: 10.1242/jcs.111773. Epub 2012 Dec 10. J Cell Sci. 2013. PMID: 23230148 Free PMC article.
-
Polar residues and their positional context dictate the transmembrane domain interactions of influenza A neuraminidases.J Biol Chem. 2013 Apr 12;288(15):10652-60. doi: 10.1074/jbc.M112.440230. Epub 2013 Feb 27. J Biol Chem. 2013. PMID: 23447533 Free PMC article.
Publication types
MeSH terms
Substances
LinkOut - more resources
Full Text Sources
Other Literature Sources
Molecular Biology Databases