Taverna: a tool for building and running workflows of services
- PMID: 16845108
- PMCID: PMC1538887
- DOI: 10.1093/nar/gkl320
Taverna: a tool for building and running workflows of services
Abstract
Taverna is an application that eases the use and integration of the growing number of molecular biology tools and databases available on the web, especially web services. It allows bioinformaticians to construct workflows or pipelines of services to perform a range of different analyses, such as sequence analysis and genome annotation. These high-level workflows can integrate many different resources into a single analysis. Taverna is available freely under the terms of the GNU Lesser General Public License (LGPL) from http://taverna.sourceforge.net/.
Figures
Similar articles
-
The Taverna Interaction Service: enabling manual interaction in workflows.Bioinformatics. 2008 Apr 15;24(8):1118-20. doi: 10.1093/bioinformatics/btn082. Epub 2008 Mar 12. Bioinformatics. 2008. PMID: 18337261
-
Biowep: a workflow enactment portal for bioinformatics applications.BMC Bioinformatics. 2007 Mar 8;8 Suppl 1(Suppl 1):S19. doi: 10.1186/1471-2105-8-S1-S19. BMC Bioinformatics. 2007. PMID: 17430563 Free PMC article.
-
XQTav: an XQuery processor for Taverna environment.Bioinformatics. 2006 May 15;22(10):1280-1. doi: 10.1093/bioinformatics/btl101. Epub 2006 Mar 21. Bioinformatics. 2006. PMID: 16551662
-
Evolution of web services in bioinformatics.Brief Bioinform. 2005 Jun;6(2):178-88. doi: 10.1093/bib/6.2.178. Brief Bioinform. 2005. PMID: 15975226 Review.
-
Workflow based framework for life science informatics.Comput Biol Chem. 2007 Oct;31(5-6):305-19. doi: 10.1016/j.compbiolchem.2007.08.009. Epub 2007 Aug 19. Comput Biol Chem. 2007. PMID: 17931570 Review.
Cited by
-
PFAS-Biomolecule Interactions: Case Study Using Asclepios Nodes and Automated Workflows in KNIME for Drug Discovery and Toxicology.Methods Mol Biol. 2025;2834:393-441. doi: 10.1007/978-1-0716-4003-6_19. Methods Mol Biol. 2025. PMID: 39312176
-
From multi-omics approaches to personalized medicine in myocardial infarction.Front Cardiovasc Med. 2023 Oct 30;10:1250340. doi: 10.3389/fcvm.2023.1250340. eCollection 2023. Front Cardiovasc Med. 2023. PMID: 37965091 Free PMC article. Review.
-
Construction of a specialized integrated simulation platform for molecule screening based on scientific computing workflow engine.Sci Rep. 2023 Sep 20;13(1):15549. doi: 10.1038/s41598-023-42913-5. Sci Rep. 2023. PMID: 37730936 Free PMC article.
-
Perspectives on automated composition of workflows in the life sciences.F1000Res. 2021 Sep 7;10:897. doi: 10.12688/f1000research.54159.1. eCollection 2021. F1000Res. 2021. PMID: 34804501 Free PMC article.
-
Software-Defined Workflows for Distributed Interoperable Closed-Loop Neuromodulation Control Systems.IEEE Access. 2021;9:131733-131745. doi: 10.1109/access.2021.3113892. Epub 2021 Sep 20. IEEE Access. 2021. PMID: 34631327 Free PMC article.
References
-
- Stein L. Creating a bioinformatics nation. Nature. 2002;417:119–120. - PubMed
-
- Alonso G., Casati F., Kuno H., Machiraju V. Web Services: concepts, Architectures and Applications. Data-Centric Systems and Applications. Berlin and Heidelberg GmBH: Springer-Verlag; 2004.
-
- Hull D., Stevens R., Lord P. Describing Web Services for user-oriented retrieval. W3C Workshop on Frameworks for Semantics in Web Services, DERI.; Austria: Innsbruck; 2005.
-
- Hull D., Stevens R., Lord P., Wroe C., Goble C. Treating shimantic web syndrome with ontologies. Proceedings of First Advanced Knowledge Technologies Workshop on Semantic Web Services (AKT-SWS04) KMi.; Milton Keynes, UK: The Open University; 2004.
-
- Oinn T., Addis M., Ferris J., Marvin D., Greenwood M., Carver T., Pocock M.R., Wipat A., Li P. Taverna: a tool for the composition and enactment of bioinformatics workflows. Bioinformatics. 2004;20:3045–3054. - PubMed
Publication types
MeSH terms
LinkOut - more resources
Full Text Sources
Other Literature Sources