Skip to main page content
U.S. flag

An official website of the United States government

Dot gov

The .gov means it’s official.
Federal government websites often end in .gov or .mil. Before sharing sensitive information, make sure you’re on a federal government site.

Https

The site is secure.
The https:// ensures that you are connecting to the official website and that any information you provide is encrypted and transmitted securely.

Access keys NCBI Homepage MyNCBI Homepage Main Content Main Navigation
. 2006 Mar 21;20(5):675-84.
doi: 10.1097/01.aids.0000216367.23325.58.

Antiretroviral nucleosides, deoxynucleotide carrier and mitochondrial DNA: evidence supporting the DNA pol gamma hypothesis

Affiliations

Antiretroviral nucleosides, deoxynucleotide carrier and mitochondrial DNA: evidence supporting the DNA pol gamma hypothesis

William Lewis et al. AIDS. .

Abstract

Design: Nucleoside reverse transcriptase inhibitors (NRTIs) exhibit mitochondrial toxicity. The mitochondrial deoxynucleotide carrier (DNC) transports nucleotide precursors (or phosphorylated NRTIs) into mitochondria for mitochondrial (mt)DNA replication or inhibition of mtDNA replication by NRTIs. Transgenic mice (TG) expressing human DNC targeted to murine myocardium served to define mitochondrial events from NRTIs in vivo and findings were corroborated by biochemical events in vitro.

Methods: Zidovudine (3'-azido-2',3'-deoxythymidine; ZDV), stavudine (2', 3'-didehydro-2', 3'-deoxythymidine; d4T), or lamivudine ((-)-2'-deoxy-3'-thiacytidine; 3TC) were administered individually to TGs and wild-type (WT) littermates (35 days) at human doses with drug-free vehicle as control. Left ventricle (LV) mass was defined echocardiographically, mitochondrial ultrastructural defects were identified by electron microscopy, the abundance of cardiac mtDNA was quantified by real time polymerase chain reaction, and mtDNA-encoded polypeptides were quantified.

Results: Untreated TGs exhibited normal LV mass with minor mitochondrial damage. NRTI monotherapy (either d4T or ZDV) increased LV mass in TGs and caused significant mitochondrial destruction. Cardiac mtDNA was depleted in ZDV and d4T-treated TG hearts and mtDNA-encoded polypeptides decreased. Changes were absent in 3TC-treated cohorts. In supportive structural observations from molecular modeling, ZDV demonstrated close contacts with K947 and Y951 in the DNA pol gamma active site that were absent in the HIV reverse transcriptase active site.

Conclusions: NRTIs deplete mtDNA and polypeptides, cause mitochondrial structural and functional defects in vivo, follow inhibition kinetics with DNA pol gamma in vitro, and are corroborated by molecular models. Disrupted pools of nucleotide precursors and inhibition of DNA pol gamma by specific NRTIs are mechanistically important in mitochondrial toxicity.

PubMed Disclaimer

Figures

Fig. 1
Fig. 1. Quantitative analysis of echocardiographic images: left ventricular (LV) mass was calculated in a blinded fashion, code was broken, and data tabulated from the (a) zidovudine (ZDV), and (b) stavudine (d4T) monotherapy groups
Data were normalized to body weight (mg/g) and plotted as mean ± SEM. In either transgenic (TG) protocol with nucleoside reverse transcriptase inhibitors (a, b), the TG cohort treated revealed increased LV mass after 35 days (P < 0.05; ANOVA). In the cohort treated with lamivudine (3TC) monotherapy, no significant difference in LV mass was found (not shown).BW, body weight; CMC, vehicle control; DNC, deoxynucleotide carrier; WT, wild type.
Fig. 2
Fig. 2. Electron microscope views of mitochondria from transgenic (TG) and wild-type (WT) hearts: deoxynucleotide carrier (DNC) overexpression in the heart caused mitochondrial cristae reduplication (TG; a, b)
Addition of nucleoside reverse transcriptase inhibitors [either zidovudine (ZDV) or stavudine (d4T); 35 days] resulted in mitochondrial destruction, loss of cristae, and amorphous deposits (arrow in a, b). In contrast, no change in cardiac mitochondria was seen between vehicle and lamivudine treatment in the DNC TG or WT (not shown). Original magnification on electron microscope: 26 000 (marker indicates 1 μm).
Fig. 3
Fig. 3. Real time polymerase chain reaction (PCR) mitochondrial (mt)DNA/nuclear (n)DNA ratios with nucleoside reverse transcriptase inhibitor treatment: transgenic (TG) and wild type (WT) cohorts were treated with (a) zidovudine (ZDV), (b) stavudine (d4T) or (c) lamivudine (3TC) mono-therapy or with vehicle control for 35 days
Tissue samples were analyzed using real-time PCR. A decrease in mtDNA/ nDNA ratio was found with both ZDV and d4T monotherapy (a, b) but not with 3TC monotherapy (c). TG exhibited a decreased mtDNA/nDNA ratio in comparison with WT. *P < 0.05; **P < 0.01; ***P < 0.001; NS, not significant.
Fig. 4
Fig. 4. Molecular modeling of nucleoside reverse transcriptase inhibitor interaction with DNA pol γ active site: (a) ZDV-MP modeled into the active site of DNA pol γ (purple) and superimposed over the active site of HIV-RT (green) based on PDB:1N6Q
The active site in DNA pol γ is shown in purple inserting ZDV-MP. This is superimposed over the equivalent location in HIV-RT (green). The azido group on ZDV has close contacts with K947 and Y951. These contacts do not occur in HIV-RT because the equivalent residues in HIV-RT, R72 is in the other direction off the helix, and Q151 is a smaller residue than Y951 and is not positioned as close to the ZDV azido group. (b) Superimposition of ZDV-MP (green), D4T-MP (red), and 3TC-MP (blue) in the active site model of DNA pol γ. D4T-MP fits into the active site similar to ddTMP or dTMP.

Similar articles

Cited by

References

    1. Dolce V, Fiermonte G, Runswick MJ, Palmieri F, Walker JE. The human mitochondrial deoxynucleotide carrier and its role in the toxicity of nucleoside antivirals. Proc Natl Acad Sci USA. 2001;98:2284–2288. - PMC - PubMed
    1. Palmieri F. Mitochondrial carrier proteins. FEBS Lett. 1994;346:48–54. - PubMed
    1. Palmieri F. The mitochondrial transporter family (SLC25): physiological and pathological implications. Pflugers Archiv –Eur J Physiol. 2004;447:689–709. - PubMed
    1. Rosenberg MJ, Agarwala R, Bouffard G, Davis J, Fiermonte G, Hilliard MS, et al. Mutant deoxynucleotide carrier is associated with congenital microcephaly. Nat Genet. 2002;32:175–179. - PubMed
    1. Carrozzo R, Bornstein B, Lucioli S, Campos Y, de la Pena P, Petit N, et al. Mutation analysis in 16 patients with mtDNA depletion. Hum Mutat. 2003;21:453–454. - PubMed

Publication types

MeSH terms