This site needs JavaScript to work properly. Please enable it to take advantage of the complete set of features!

Skip to main page content

Email citation

Add to Collections

Your saved search

Name of saved search:

Search terms:

Test search terms

Would you like email updates of new search results?

Yes
No

Email: (change)

Frequency:

Which day?

Which day?

Report format:

Send at most:

Send even when there aren't any new results

Optional text in email:

Your RSS Feed

Review

. 2004 Apr;5(4):276-87.

doi: 10.1038/nrg1315.

Applied bioinformatics for the identification of regulatory elements

Wyeth W Wasserman¹, Albin Sandelin

Affiliations

Affiliation

¹ Centre for Molecular Medicine and Therapeutics and British Columbia Women's and Children's Hospitals, and Department of Medical Genetics, University of British Columbia, Vancouver, British Columbia V5Z 4H4, Canada.

PMID: 15131651
DOI: 10.1038/nrg1315

Review

Applied bioinformatics for the identification of regulatory elements

Wyeth W Wasserman et al. Nat Rev Genet. 2004 Apr.

. 2004 Apr;5(4):276-87.

doi: 10.1038/nrg1315.

Authors

Wyeth W Wasserman¹, Albin Sandelin

Affiliation

¹ Centre for Molecular Medicine and Therapeutics and British Columbia Women's and Children's Hospitals, and Department of Medical Genetics, University of British Columbia, Vancouver, British Columbia V5Z 4H4, Canada.

PMID: 15131651
DOI: 10.1038/nrg1315

No abstract available

PubMed Disclaimer

Similar articles

Discovering sequences with potential regulatory characteristics.
Bina M, Wyss P, Lazarus SA, Shah SR, Ren W, Szpankowski W, Crawford GE, Park SP, Song XC. Bina M, et al. Genomics. 2009 Apr;93(4):314-22. doi: 10.1016/j.ygeno.2008.11.008. Epub 2008 Dec 30. Genomics. 2009. PMID: 19084590
In silico characterization of DNA motifs with particular reference to promoters and terminators.
Lavigne R, Villegas A, Kropinksi AM. Lavigne R, et al. Methods Mol Biol. 2009;502:113-29. doi: 10.1007/978-1-60327-565-1_8. Methods Mol Biol. 2009. PMID: 19082554
Bioinformatics for the 'bench biologist': how to find regulatory regions in genomic DNA.
Nardone J, Lee DU, Ansel KM, Rao A. Nardone J, et al. Nat Immunol. 2004 Aug;5(8):768-74. doi: 10.1038/ni0804-768. Nat Immunol. 2004. PMID: 15282556 Review.
Two insulators are not better than one.
Mongelard F, Corces VG. Mongelard F, et al. Nat Struct Biol. 2001 Mar;8(3):192-4. doi: 10.1038/84905. Nat Struct Biol. 2001. PMID: 11224556 No abstract available.
Regulatory elements and expression profiles.
Bucher P. Bucher P. Curr Opin Struct Biol. 1999 Jun;9(3):400-7. doi: 10.1016/S0959-440X(99)80054-2. Curr Opin Struct Biol. 1999. PMID: 10361093 Review.

See all similar articles

Cited by

Microglia recapitulate a hematopoietic master regulator network in the aging human frontal cortex.
Wehrspaun CC, Haerty W, Ponting CP. Wehrspaun CC, et al. Neurobiol Aging. 2015 Aug;36(8):2443.e9-2443.e20. doi: 10.1016/j.neurobiolaging.2015.04.008. Epub 2015 Apr 25. Neurobiol Aging. 2015. PMID: 26002684 Free PMC article. Review.
Nrf2b, novel zebrafish paralog of oxidant-responsive transcription factor NF-E2-related factor 2 (NRF2).
Timme-Laragy AR, Karchner SI, Franks DG, Jenny MJ, Harbeitner RC, Goldstone JV, McArthur AG, Hahn ME. Timme-Laragy AR, et al. J Biol Chem. 2012 Feb 10;287(7):4609-27. doi: 10.1074/jbc.M111.260125. Epub 2011 Dec 15. J Biol Chem. 2012. PMID: 22174413 Free PMC article.
Psoriasis drug development and GWAS interpretation through in silico analysis of transcription factor binding sites.
Swindell WR, Sarkar MK, Stuart PE, Voorhees JJ, Elder JT, Johnston A, Gudjonsson JE. Swindell WR, et al. Clin Transl Med. 2015 Mar 19;4:13. doi: 10.1186/s40169-015-0054-5. eCollection 2015. Clin Transl Med. 2015. PMID: 25883770 Free PMC article.
Evaluating the impact of single nucleotide variants on transcription factor binding.
Shi W, Fornes O, Mathelier A, Wasserman WW. Shi W, et al. Nucleic Acids Res. 2016 Dec 1;44(21):10106-10116. doi: 10.1093/nar/gkw691. Epub 2016 Aug 4. Nucleic Acids Res. 2016. PMID: 27492288 Free PMC article.
Position Weight Matrix or Acyclic Probabilistic Finite Automaton: Which model to use? A decision rule inferred for the prediction of transcription factor binding sites.
Lavezzo GM, Lauretto MS, Andrioli LPM, Machado-Lima A. Lavezzo GM, et al. Genet Mol Biol. 2024 Jan 19;46(4):e20230048. doi: 10.1590/1678-4685-GMB-2023-0048. eCollection 2024. Genet Mol Biol. 2024. PMID: 38285430 Free PMC article.

See all "Cited by" articles

Publication types

Actions
Actions

MeSH terms

Actions
Actions
Actions
Actions
Actions
Actions
Actions

LinkOut - more resources

Full Text Sources
- Nature Publishing Group
Other Literature Sources
- The Lens - Patent Citations Database