What lies beneath the airway mucosal barrier? Throwing the spotlight on antigen‐presenting cell function in the lower respiratory tract

Introduction

The prevalence of respiratory inflammatory and infectious diseases has increased significantly over the last few decades. The disappointing clinical efficacy of vaccines and drugs developed to prevent and treat respiratory diseases underscores our limited understanding of the immunoregulatory mechanisms of the airway microenvironment. ¹ , ² New immunological paradigms are urgently needed to drive vaccine development and drug discovery for respiratory diseases. Considering its significance, few advances have been made in our understanding of immunity to infection of the lower airways. The airways are exposed to a wide variety of inhaled antigens, and therefore, the induction of primary immunity to these antigens is tightly controlled by professional APC such as dendritic cells (DC) and macrophages (Table 1). ³ , ⁴ Various subsets of DC and macrophages in the airways act as ‘gate keepers’ to the lung and become activated soon after pathogen entry. ⁵ , ⁶ Once activated, they efficiently participate in phagocytosis, killing, antigen transport and co‐ordination of the innate and adaptive immune response, the caveat being that most antigens that reach the airway mucosal barrier (AMB) are harmless. ⁷ Therefore, the discriminatory powers of the respiratory immune system are stretched to the limit as it must separate antigenic ‘noise’ from the rare pathogen signal. Once selected, it must regulate the immune response to these antigens to minimise collateral damage to the lung airways. The airways are therefore replete with mechanisms that prevent an inflammatory response, such as (1) setting the ‘default’ T‐cell response to a ‘tolerance’ mode (non‐inflammatory Th₂ cell‐mediated immunity) ⁷ , ⁸ ; (2) induction of G₀/G₁ T‐cell cycle arrest ⁹ ; (3) production of iNOS or IL‐10 by alveolar macrophages (AM) ¹⁰ ; and (4) activation of FOXP3⁺ regulatory T cells (Treg), ⁸ , ¹¹ all of which play a role in suppressing T‐cell activation at the AMB. Therefore, initiation of inflammation or an immune response requires a combination of events that override the ‘default’ inhibitory mechanisms at the AMB. ⁶ , ⁷ This review focuses on the immunological processes that regulate antigen uptake and presentation in the lower airways. Important areas that are discussed briefly owing to space limitations include immunoregulatory events in lymph nodes that drain the airways and Th₂‐mediated inflammatory response leading to allergy/atopy in vivo in mice.

Anatomical structure of the airways

The airways can be divided into upper and lower tracts. ⁷ The upper airway consists of the nose, nasal cavity, paranasal sinuses and the pharynx. ¹² The lower airway consists of the larynx, trachea, bronchi and bronchioles that end in tiny air sacs known as alveoli. The trachea divides to form the right and left bronchi that branch about 23 times to form a pattern called the bronchial tree (Figure 1). Passages smaller than 1 mm in diameter are called bronchioles. Combined, the airways of the lung have an approximate surface area of 70 m² in humans. ⁷ The main function of the upper airways is to warm, to humidify and to filter air. The lower airways consist of a conducting zone, which forms the respiratory passage for air, and a respiratory zone, which is the site of gas exchange. ¹² This zone is composed of the terminal bronchioles that feed into respiratory bronchioles. The respiratory bronchioles lead into winding alveolar ducts that terminate in clusters of alveoli.

The tracheal wall consists of several layers: mucosa, submucosa and adventitia overlying hyaline cartilage. ¹² The mucosa is composed of a ciliated pseudostratified epithelium containing goblet cells (detailed below) (Figure 1). Its cilia continually propel mucus towards the pharynx. Mucus is mainly formed of glycoproteins called mucins. ¹³ MUC5AC and MUC5B are the most abundant mucins produced by the human epithelium besides membrane‐anchored mucins such as MUC1 and MUC4. Epidermal growth factor receptor (EGFR) plays a pivotal role in the synthesis and secretion of mucins. ¹³ Mucins modulate the activity of alveolar macrophages (AM). The tissue composition of the bronchi is similar to the trachea. ¹² However, as the bronchi branch and become smaller, the following structural changes occur: (1) mucosal epithelium thins and changes from pseudostratified to columnar and then to cuboidal in the terminal bronchioles, and (2) mucus‐producing cells decrease in the bronchioles and the amount of smooth muscle in the wall increases, allowing bronchioles to resist air pressure (Figure 1). Unlike the tracheal wall, the alveolar wall consists of a single‐cell lining of respiratory epithelium composed of type‐I and type‐II alveolar epithelial cells (AEC) that is supported by a basement membrane and a sub‐epithelium containing a very rich vascular bed ¹⁴ and immune cells such as DC and macrophages ¹⁵ (Figure 1). The vascular bed is separated from the overlying respiratory epithelium by a mere 0.2 µm basement membrane, which allows for easy re‐oxygenation of blood.

Alveolar macrophages

Alveolar macrophages are located almost exclusively in the alveolar space of the lung and play an instrumental role in lung immunity (Figure 1). ⁶ They express CD11c^hiCD11b⁻F4/80^loMHC‐II^loCD206^hi (Table 1). Under steady‐state conditions, AM constitute about 90% of the total leukocytes in the alveolar space and about 75–80% of the total macrophage population harvested from the bronchoalveolar lavage fluid (BALF) of rhesus macaques and humans. ³ , ¹⁶ AM are specialised macrophages that play a central role in homeostasis, tissue remodelling, immunosurveillance and host response to pathogens. ⁶ , ¹⁷ Attempts to classify AM into distinct subsets have led to a variety of descriptions, ¹⁸ and it is widely accepted that they do not fit into any current macrophage classification. ⁶ AM play an especially important role in the protection of the lower airways. ¹⁵ AM‐ablated CD169‐DTR mice infected with PR8 influenza virus show increased virus load, severe airway inflammation, pulmonary edema and die from the disease. ¹⁹ AM are ‘quiescent’ in the steady state, producing little inflammatory cytokines and displaying poor phagocytic activity. ⁶ In this state, they actively suppress both alveolar and interstitial DC and T cells. ²⁰ , ²¹ This is reinforced by the fact that DC recruitment and migration to draining lymph node (DLN) are boosted 20‐fold after AM depletion. ²² Similarly, IL‐13‐dependent eosinophilic and Th₂ inflammation is enhanced in mice depleted of AM using clodronate liposomes. ²³ However, DC suppression could be reversed by TLR stimulation which resulted in a potent inflammatory response. ²⁴ How do AM induce a switch between these two opposing functions of DC (suppression versus activation) following pathogen entry? AM adhering to AEC in the steady state induce the expression of αvβ6 integrin and TGF‐β, which suppress AM phagocytic activity. ¹⁸ , ²⁴ Following TLR stimulation, TGF‐β is no longer produced by AEC, which results in AM switching to a pro‐inflammatory phenotype.

Interstitial macrophages

Interstitial macrophages (IM) are heterogeneous macrophages that are conserved across tissues. They are involved in tissue homeostasis and inflammation. ²⁵ Two phenotypically distinct sub‐populations of IM, CD206⁺ and CD206^−/dim located in the peribronchial space and alveolar interstitium of the lung, respectively, have been identified (Table 1). ¹⁶ CD206⁺ and CD206⁻ subsets largely overlap with Lyve‐1^hiMHC‐II^lo and Lyve‐1^loMHC‐II^hi subsets described by Chakarov et al. Far fewer in number, the phenotypic expression of CD163, CD64 and CD11b by IM and localisation in the perivascular space resembles that of perivascular macrophages (PVM) that lie on the abluminal surface of post‐capillary venules and perform crucial activities at the blood–tissue interface. ¹⁶ Detailed studies to assess whether IM have a similar function to that of PVM have not been conducted. However, fluorescent Mycobacterium tuberculosis (Mtb) reporter strains exhibited lower stress response and higher replication in AM compared to IM. ²⁶ Further, IM depletion increased bacterial burden suggesting that IM are superior at controlling bacterial growth. ²⁵ Difficulties associated with IM studies may be related to technical limitations of lung imaging, especially as bronchi and bronchioles are embedded deep in the lung tissue. ²⁷ Although lung explant imaging is a good alternative, the mucous layer and the ‘air–liquid interface’ are likely compromised in such in situ studies. ²⁷ In this context, DC have been reported to project trans‐epithelial extensions into the airway lumen; however, intravital studies were unable to observe this phenomenon. ²⁸ Therefore, it remains unclear whether inhaled particles are taken up by DC localised in the bronchioles or the alveoli. ²⁹ Regardless, there is evidence that IM contributes to AM replenishment as AM are long‐lived cells with negligible cell turnover. ¹⁶ A rapid response to infection/injury requires accelerated recruitment of cells that have the plasticity to transform into AM, and IM fit this description. Further, stimulation of IM by IFN‐γ and LPS leads to superior expression of TNF‐α, suggesting that IM, more than AM, form the front line of mucosal defence in the alveoli. ¹⁶

Dendritic cells

DC play an important role at the AMB in inducing tolerance and determining the severity of inflammatory disease (Figure 1). Using a two‐tiered nomenclature suggested by Guilliams et al., ³⁰ , ³¹ mouse lung DC can be divided into three types under tier 1 – BATF3‐dependent cDC1 (conventional DC1), IRF4‐dependent cDC2 and E2‐2‐dependent pDC (plasmacytoid DC). A fourth type of DC generated under inflammatory conditions from monocytes is commonly known as monocyte‐derived DC (MoDC) (Table 1). ³² Under tier 2, the cDC subset in the lung can be further differentiated based on the expression of CD103 or CD11b into CD11c⁺CD11b^loCD103⁺ and CD11c⁺CD11b^hiCD103⁻. pDC in the lung are CD11c^hiMHC‐II^intB220^hiGr‐1^hi. Mouse studies have generally used whole‐lung digests, and therefore, major differences between DC populations from the AMB versus parenchyma have not been appreciated. Mouse airways are dominated by CD11c^hiMHC‐II^hiCD11b⁺CD4⁻CD8⁻CD205⁺ DC, and subsets typically seen in lymphoid tissues such as CD8α⁺ DC and CD4⁻CD8⁻ DC are absent. ³³ Additionally, a small population of CD11c^intMHC‐II^lo120G8^pos pDC is also detected in the airways. On the other hand, DC in the alveoli are CD11c⁺CD11b⁺F4/80^lo. ³⁴ Flow cytometric surveys have identified several airway‐ and alveolar‐resident phagocytes in the BALF of healthy humans. Besides AM, CD14⁺ DC and CD14⁻ DC (macrophage‐like) and Langerin⁺, BDCA1⁺CD14⁺ and BDCA1⁺CD14⁻ DC (DC‐like) have been identified. ³⁵ In the Itgax‐YFP or CX₃CR1‐GFP mice in which cDC express YFP and monocytes/macrophages express GFP, respectively, cDC are located near the large airways, whereas monocytes and AM are localised in the alveolar space. ³² MoDC are located at the interface of blood vessels and airways in MacBlue mice, whereas pDC are located in the alveolar interstitium. A balance between cDC and pDC in the lung is crucial for the outcome of pulmonary infection as Flt3L‐mediated DC expansion is compromised in pDC‐depleted mice. ³⁶ Further, depletion studies revealed that pDC‐induced Treg expansion via Sema4a‐mediated pathway protects against severe asthma. ³⁷ pDC activation also alleviates airway hyperreactivity by increasing the apoptotic rate of ILC2 through IFN‐α production. ³⁸ Immunostaining of the rat trachea has revealed that only 20% of total airway mucosal DC population are found within the airway epithelium while the remaining 80% lie beneath the epithelium. ³⁹ Intraepithelial DC have endocytic activity, whereas the subepithelial cells do not. Freshly isolated airway DC are functionally immature, MHC‐II^lo, endocytosis^hi, mixed lymphocyte reaction^lo, IL‐10^hi and stimulate Th₂ responses. ⁴⁰ They retain a somewhat ‘immature’ phenotype, even after moving to the DLN, and this is likely to be critical for the development of immune tolerance. Exposure of DC to thymic stromal lymphopoietin (TSLP), TGF‐β and vascular endothelial growth factor (VEGF) or even interaction with AM may promote this tolerogenic phenotype. Alteration in the tolerogenic phenotype of airway DC leads to exaggerated Th₂ responses to inhaled antigens and allergic airway inflammation. ⁴¹ In line with this, conditional depletion of airway DC by treatment of thymidine kinase‐transgenic mice with the antiviral drug ganciclovir resulted in a significant decrease in the number of bronchoalveolar CD4⁺, CD8⁺ T and B lymphocytes and eosinophilic airway inflammation. ⁴² However, as mentioned, this topic is beyond the scope of this review.

Epithelial cells

Epithelial cells of the AMB are being increasingly implicated in infectious disease pathogenesis, although their role in asthma/allergy has been known for some time. ⁴³ The respiratory epithelium composed of AEC‐I and AEC‐II is a physical barrier involved in modulating innate immunity and rapid clearance of environmental agents (Figure 1). ¹⁴ AEC‐II, which constitute about 7% of the total alveolar surface, secrete cytokines and chemokines and express MHC‐II constitutively on their cell surface, a phenotype rarely exhibited by non‐professional APC. ⁴⁴ , ⁴⁵ AEC‐II secrete a mixture of surfactants known as surfactant protein A (SP‐A), SP‐B, SP‐C and SP‐D named after their chronologic order of discovery. ⁴⁶ Surfactant is formed of lipid membranes (90%) and proteins (10%) that reduce surface tension in the alveoli. ¹³ SP‐A and SP‐D are water‐soluble and belong to the family of collectins (collagenase‐like lectins). SP‐B and SP‐C occur in significantly smaller amounts than SP‐A. Collectins play a major role in lung defence as shown by their capacity to inactivate respiratory virus and gram‐negative bacteria. They modulate AM response by binding to SIRPα, TLR4 and TLR2 receptors, enhance phagocytosis of bacteria by acting as opsonins, and regulate inflammation by modulating neutrophil chemotaxis. ¹³ Proteases produced by AEC‐II and neutrophils degrade surfactant proteins and modulate immune cells whereas anti‐proteases produced by pathogens such as Pseudomonas aeruginosa (Pa) elastase and Pa protease IV counter this effect. AEC‐II‐derived factors may also play an important role in promoting inflammation, regulating DC function and controlling bacterial growth. ⁴⁴ , ⁴⁵ AEC can express a variety of adhesion molecules and soluble mediators such as TGF‐β, prostaglandins, nitric oxide, TSLP and IL‐10 through which they are likely to modulate DC function within the airway. In vitro studies have also shown that AEC‐II present mycobacterial proteins to MHC‐II‐restricted CD4⁺ T cells. ⁴⁵ Why would AEC‐II present antigen to T cells when other professional APC such as AM and DC reside in the AMB? The answer may lie in the necessity to elicit a rapid recall response to certain pathogens, such as Mycobacteria. For example, the memory T‐cell response (especially the CD8⁺ subtype, which are less reliant on T‐cell receptor (TCR) signalling and APC co‐stimulation) is crucial for protection against Mtb and may be stimulated by non‐professional APC. ⁴⁷ Of interest, AEC‐II does not express detectable levels of CD80 and CD86 and induces tolerance to environmental antigens in naïve T cells. ⁴⁴ , ⁴⁵ Thus, AEC‐II may be a crucial player that affects the balance between tolerance and inflammation in the AMB.

Antigen uptake in the airways

DC and AM are both strategically positioned in the airways for antigen uptake (Figure 1). They are the predominant phagocytic populations of the lung, in the steady state and disease. ⁵ Studies have shown that both DC and macrophages extend processes into the airways for antigen uptake, similar to DC in dermal micro‐vessels and intestinal tissue. ⁵ Interlinked sheets of tracheal CD103⁺ DC line the mucosal surface. ⁴⁸ These DC associate tightly with the epithelium via the integrin CD103 and are rarely harvested in the BALF. Experiments using immunohistochemical staining have positioned them on the basal side of the epithelium wherein they express tight junction proteins such as Claudin‐1, Claudin‐7 and Zonulin. ⁴⁹ These molecules enable DC protrusions to capture antigen from the airway lumen, as shown by DC reaching across the airspace to engulf fluorescent particles. After which, they traffic to the DLN to elicit T‐cell responses.

Two subsets of migratory cDC, CD11c⁺CD11b^loCD103⁺ and CD11c⁺CD11b^hiCD103⁻, have been identified in the conducting airways of healthy rats with a turnover rate of 2–3 days. ⁵ They capture and ferry antigenic cargo from the airways to the DLN and present antigen to T cells (Figure 1). However, in order for this to occur, antigens must get past physical barriers such as the mucociliary escalator, surfactants and highly phagocytic AM. In this context, DC have been reported to acquire antigen in the airways once a complete antigenic saturation of AM (approx. 10⁹ organisms) occurs. ⁵⁰ Once activated, AM can engulf up to 10 bacteria each before there is a spillover to the DC compartment. ⁵⁰ This may be one of many mechanisms AM use for suppressing T‐cell responses – limiting the access of DC to pulmonary pathogens. This is supported by studies on AM‐depleted rodents in which lung DC show enhanced APC function and T cells acquire a pro‐inflammatory phenotype. ²⁰ Taken together, AM are more likely to suppress antigen presentation function rather than directly suppress T cells. ²² Certain intracellular pathogens have developed mechanisms to exploit site‐specific immunosuppression by AM to their advantage. The immunosuppressive activity of AM may therefore contribute to disease severity by enabling pathogens to replicate before they are overcome by immune cells. For example, while AM express high levels of iNOS in Mtb‐infected patients and kill Mtb directly, ⁵¹ they also suppress T‐cell activation. ⁵² Furthermore, in the early stages of Mtb infection in mice, the bacteria inhaled into the respiratory airways via aerosol are taken up by AM, which are unable to migrate to the DLN, resulting in delayed trafficking of antigen and T‐cell activation. ⁵³ Meanwhile, Mtb burden in the lung increases by 10 000–100 000‐fold in mice leaving the ensuing T‐cell response unable to eradicate the pathogen. ⁵⁴ However, T‐cell responses are efficiently induced when mycobacterial antigens of the early secreted antigenic target 6 kda (ESAT‐6) protein family are engineered to circumvent AM and targeted into specialised DC subsets via CD11b or CD11c β2‐integrins.

Antigen presentation in the airways

After antigen acquisition, CD103⁺ DC traffic to the DLN at a lower frequency than CD11b^hi DC. ⁵⁵ , ⁵⁶ This limitation of CD103⁺ DC can be offset by their capacity to ferry larger quantities of antigen per cell, suggesting differential capacities in these two subsets for acquiring and presenting antigen. Another major difference is the exclusive capacity of CD103⁺ DC to acquire, transport and cross‐present apoptotic cell‐associated antigen to CD8⁺ T cells in the DLN. ⁵⁶ Thus, the primary role of trafficking cellular, particulate and soluble antigen from the airways to the DLN lies with the migratory subsets of CD103⁺ and CD11b^hi DC, but not plasmacytoid DC, both during steady state and infection. Once DC reach DLN, they present antigen to CD4⁺ and CD8⁺ T cells (Figure 1). ⁵⁷ While CD11b^hi DC present antigen via MHC‐II promoting CD4⁺ T‐cell response, CD103⁺ DC cross‐present soluble antigen via MHC‐I to CD8⁺ T cells. ⁵⁷ In contrast, AM take up particulate matter delivered intranasally but do not migrate to DLN. ²² Therefore, they are not considered to have a role in antigen presentation in lymphoid tissue. After stimulation by DC, naive T cells undergo multiple rounds of cell division in the DLN and emigrate back to the site of infection in the lung where they can further interact with viral antigen‐displaying inflammatory DC. ⁵⁸ This second round of T‐cell interaction with DC in the infected lung tissue is crucial because in vivo depletion of lung DC leads to defective viral clearance. In this context, CD4⁺CD25⁺FOXP3⁺LAG3⁺CTLA4⁺CD45RC⁺ Treg cells play a central role in controlling airway DC function and allergen sensitisation in rats. ⁵⁹ Treg maintain immune homeostasis in the lung by suppressing inflammation in both steady state and infectious disease. ⁷ In respiratory syncytial virus (RSV)‐infected mice, Treg depletion leads to delayed viral clearance and excessive pulmonary inflammation. ⁶⁰ The role of pDC in assisting Treg homeostasis is understudied; however a recent report points to an important role for this interaction in the regulation of Klebsiella‐pneumonia progression. ⁶¹

It is important to distinguish antigen presentation in DLN from that occurring locally in the lung or at the AMB. In a landmark study, Saini et al. ⁶² showed that local DC antigen presentation occurs in the lung in early stages of respiratory infection. Mice infected with a Mtb variant (deleted for the gene PE_PGRS47) showed enhanced MHC class II‐restricted antigen presentation by DC in all organs in vivo. Therefore, the antigenic load at the site of infection is critical for the timely arrival of CD8⁺ T cells into the airways, and antigen availability is also a crucial factor for CD8⁺ T‐cell activation in the lung. ⁶³ CD4⁺ T cells show increased IFN‐γ production when administration of synthetic peptides led to increased antigen presentation in lung lesions. ⁶⁴ Further, an increased number of migration‐arrested, IFN‐γ‐producing effector T cells home into areas of the lung that have abundant antigen. One of the earliest studies used OVA‐coated fluorescent latex beads to track the sites and timing of antigen uptake and presentation within the airways. ⁶⁵ Using this approach, beads were detected in lung APC as early as 2 h after intranasal injection. The data show that antigen‐loaded APC can traffic from the airways to the lung almost immediately. This is followed by greater numbers of transferred OVA‐specific Th₁ but not Th₂ or naïve cells localising with bead⁺ APC. Based on these observations, the authors concluded that productive antigen/APC/T‐cell interactions can take place in the lung even before the antigen has reached the DLN. ⁶⁶ Such early encounters of T effector cells with antigen may be especially important for the development of a robust secondary (recall) immune response. Additionally, studies have shown that intranasally delivered antigens were taken up and presented to antigen‐specific T cells by CD11c^hi APC that remained within lung tissues and did not migrate to secondary lymphoid organs. ⁶⁶

The time‐consuming process of trafficking antigen to the DLN becomes redundant under certain condition such as asthma, which begins within 8 h of antigen inhalation. ⁶⁷ During influenza infection for example, trans‐presentation of IL‐15 directly in the lung by MHC class I‐antigen‐loaded DC has the same effect as antigen presentation to CD8⁺ T cells in the DLN. ⁶⁸ Seminal studies have suggested that antigen‐bearing DC can fast‐track antigen presentation in the airways by directly presenting antigen to T cells in situ. ²⁹ However, the conundrum is that only 3% of airway‐resident DC project processes between the epithelial cells, and even those never extend past the epithelium into the airspace. On the other hand, even though alveolar DC actively extend and retract dendrites along the AMB to capture antigen‐loaded microspheres, antigen‐specific T cells preferentially interact with airway‐resident DC, rather than alveolar DC. ²⁹ These data suggest that direct antigen presentation at the AMB, if and when it occurs, is a highly regulated process in the steady state. It appears that DC are granted access to antigen only in the most distal lung compartment thus restricting immune response to the most invasive pathogen. Airways and alveoli are therefore treated as distinct sites by our immune system, and the differential capacity for T‐cell activation by APC may be a consequence of such a compartmentalisation. ⁷ Dysregulation of these tightly controlled processes in certain microenvironments therefore invariably leads to disease.

Lung niches

Spatially, ‘compartmentalised niches’ such as inducible bronchus‐associated lymphoid tissue (iBALT) and nasal‐associated lymphoid tissue (NALT) also play a role in the immunity of the respiratory tract that is distinct from that in lymphoid or peripheral tissues. ⁶⁹ , ⁷⁰ Influenza‐specific CD4⁺ and CD8⁺ resident memory T cells are expanded and maintained long term in iBALT, which are essentially sites of regeneration after tissue injury. ⁷¹ As T cells are replaced every 10 days in the airways, they must undergo continual recruitment from the circulation for their maintenance. ⁷² How do these circulatory T cells transition to a sessile form in the airways? Recent data show that encounter with cognate antigen is a key event for the conversion of circulating to resident T cells in the lung; however, the site or cells involved have not been identified. ⁶⁹ Whether compartmentalised niches serve as a reservoir for antigen in the airway is unknown. It is clear however that spatial niches are important for protection against secondary infections by respiratory pathogens. Unlike antigen‐dependent T‐cell activation in the lung, tissue‐resident memory (known as T_RM) CD8⁺ T cells develop independently of cognate antigen recognition and persist in the airways to provide long‐term protection. ⁷³ Given the intensity of antigenic exposure in the airways, this seems logical as T‐cell activation events require strict control at this site. This may also explain why lung and airway T_RM show distinct differences in their repertoire and differential ability to respond to antigen. Immune regulation may be achieved among other mechanisms by locking memory T cells into G₀/G₁ phase of the cell cycle.

Therapeutic targets of APC function – A clinical perspective

Future perspectives

The confluence of cell biology and imaging has improved the sensitivity and spatio‐temporal resolution of events that take place in the airways and lung during infectious disease. As a consequence, fascinating insights into the interaction of immune cells, especially APC and pathogens, are certain to emerge. There are multiple APC‐mediated processes that regulate T cells at the AMB: (1) poor antigen presentation by AM; (2) tolerogenic phenotype of DC and limited ability to uptake antigen; and (3) non‐professional APC such as AEC‐II having a tolerogenic effect on naïve T cells. These biological processes have rarely been visualised in real time in the lung, and adopting new technologies will immensely benefit such studies. Exploration of the ‘gut–lung axis’, wherein the microbiome of the gut is believed to influence susceptibility to pulmonary disease, is also becoming a key stream of infectious diseases research. The gut microbiome has been shown to affect lung susceptibility to viral, fungal and bacterial pathogens because of the common developmental origins the digestive and respiratory systems share. Consequently, gut–lung crosstalk is expected to become a fertile area of study in the future. A relatively unexplored domain for possible novel therapeutics is naturally occurring products derived from fauna and flora. Such products have shown great promise in suppressing the pathology and clinical signs associated with inflammatory diseases and are expected to shape future areas of study. ¹⁰⁰

Conflict of interest

The authors declare no conflict of interest.

Author contributions

SP wrote the manuscript. VM contributed to clinical perspectives. AK revised the manuscript and provided critical input.