The Structure of an Interdomain Complex That Regulates Talin Activity^*,S⃞,♦

EXPERIMENTAL PROCEDURES

Peptide Preparation—The preparation of U-¹⁵N-labeled β3-integrin tail was performed as described previously (29).

Expression of Recombinant Talin Polypeptides—The cDNAs encoding murine talin1 residues 309–400 (F3) and 1655–1822 were synthesized by PCR using a mouse talin1 cDNA as template and cloned into the expression vector pet-151TOPO (Invitrogen). Talin polypeptides were expressed in Escherichia coli BL21 STAR (DE3) cultured either in LB for unlabeled protein or in M9 minimal medium for preparation of isotopically labeled samples for NMR. Recombinant His-tagged talin polypeptides were purified by nickel-affinity chromatography following standard procedures. The His tag was removed by cleavage with AcTEV protease (Invitrogen), and the proteins were further purified by anion-exchange (Domain E) or cation-exchange (F3). U-¹⁵N-labeled F3 (309–405) and F3 point mutants were made as described previously (30). Protein concentrations were determined using their respective extinction coefficient at 280 nm. Protein concentrations were based on absorption coefficients calculated from the aromatic content according to ProtParam as follows: talin 1655–1822, 3105 m^-1cm^-1; talin F3, 16,960 m^-1cm^-1; PIPKIγ peptide, 8480 m^-1cm^-1; integrin peptide, 8480 m^-1cm^-1.

NMR Spectroscopy—NMR experiments for the resonance assignment and structure determination of talin 1655–1822 were carried out with 1 mm protein in 20 mm sodium phosphate, pH 6.5, 50 mm NaCl, 2 mm dithiothreitol, 10% (v/v) ²H₂O. NMR spectra of all the proteins were obtained at 298 K using Bruker AVANCE DRX 600 or AVANCE DRX 800 spectrometers both equipped with CryoProbes. Proton chemical shifts were referenced to external 2,2-dimethyl-2-silapentane-5-sulfonic acid, and ¹⁵N and ¹³C chemical shifts were referenced indirectly using recommended gyromagnetic ratios (31). Spectra were processed with TopSpin (Bruker Corp.) and analyzed using Analysis (32). Three-dimensional HNCO, HN(CA)CO, HNCA, HN(CO)CA, HNCACB, and HN(CO)CACB experiments were used for the sequential assignment of the backbone NH, N, CO, Cα, and Cβ resonances. Side chain assignments were obtained using three-dimensional HBHA(CO)NH, HBHANH, H(C)CH-TOCSY, and (H)CCH-TOCSY experiments. Aromatic side chain assignments were obtained using ¹³C-resolved three-dimensional NOESY-HSQC. The resonance assignments of 1655–1822 have been deposited in the BioMagResBank with the accession number 15457.

Experiments to examine the competition between talin 1655–1822 and the β3-integrin tail were performed on a spectrometer equipped with a 500-MHz Oxford Instruments superconducting magnet and GE-Omega computer. Samples were prepared in 50 mm phosphate buffer, pH 6.1, containing 100 mm NaCl, 1 mm dithiothreitol, 5% ²H₂O, and Complete protease inhibitors (Roche Applied Science). Data were processed using NMRPipe (33), and spectra were visualized using SPARKY. Spectra were referenced as described above (31). The ¹H and ¹⁵N resonances of U-¹⁵N-labeled β3-integrin tail were assigned previously (29).

Structure Calculations—Distance restraints were obtained from the following experiments: three-dimensional ¹⁵N-edited NOESY-HSQC (800 MHz, 100 ms), ¹³C-edited NOESY-HSQC (800 MHz, 100 ms), and ¹³C-edited NOESY-HSQC (800 MHz, 80 ms) on aromatics. All NOESY peaks were picked semiautomatically in Analysis with noise and artifact peaks removed manually. Cross-peak intensities were used to evaluate target distances. Dihedral restraints (Φ/Ψ) were obtained from the TALOS data base (34). Hydrogen-bond restraints within secondary structure elements identified from initial rounds of structure calculation were incorporated based on the temperature dependence of NMR chemical shifts (35) using a series of ¹H,¹⁵N HSQC spectra collected from 15 to 35 °C. Initial models were generated with CYANA using the CANDID (36) method for NOESY cross-peak assignment and calibration. These models were used as initial structures in structure calculations by Aria (37). The acceptance tolerances in the standard protocol of Aria 1.2 were modified to set violation tolerances to 5.0, 2.0, 1.0, 0.5, 2.0, 0.5, and 0.1 Å for iterations 2–8, respectively, with iteration 1 containing the initial models. Any cross-peaks rejected by Aria were checked manually, and those found to be reliable were added to the calculation. 200 structures were calculated at each iteration, the 20 lowest energy structures retained and 10 used for final restraint analysis. The 30 lowest energy structures from iteration 8 were further refined in the presence of explicit water molecules. Molecular models were generated using PyMOL (38). The structural statistics for each domain are presented in Table 1. The set of 20 lowest energy structures has been submitted to the Protein Data Bank with the accession number 2KBB.

NMR Titrations—All titrations were carried out in 20 mm phosphate, pH 6.5, 50 mm NaCl, 2 mm dithiothreitol using ¹H,¹⁵N HSQC. Weighted combined ¹H and ¹⁵N amide secondary shifts (Δ(H,N)) were calculated using the equation

(Eq. 1)

where W_H and W_N are weighting factors for the ¹H and ¹⁵N amide shifts, respectively (W_H = 1 and W_H = 0.15) (39), and Δ= δ_bound – δ_free. Dissociation constants (K_d) were determined by fitting the changes in secondary shift with concentration to the following equation

(Eq. 2)

where Δ(H,N) is the weighted secondary shift, Δ(H,N)₀ is the shift at saturation, and [P] and [L] are the protein and ligand concentrations, respectively. Data from peaks with the largest shift changes were fitted to this equation using Analysis. Competition experiments were conducted by acquiring ¹H,¹⁵N HSQC spectra of 50 μm β3-tail in the presence of 0.25 mm talin F3 domain, 1 mm talin 1655–1822, or both. Weighted combined ¹H and ¹⁵N amide shifts (Δ(H,N)) were calculated as above.

Molecular Docking Calculations—Docking of talin 1655–1822 to F3 was performed with the software HADDOCK2 (40, 41). The starting structures were model 1 of the F3 complex with the β3/PIPKIγ-chimeric peptide (Protein Data Bank (PDB) ID code 2H7D) (30) and the lowest energy NMR structure of talin 1655–1822. Mutagenesis data, chemical shift mapping, and surface accessibility data were used to define the active residues according to HADDOCK definitions. The well defined filtered NOEs between Tyr-377 in F3 and Leu-1680 and Val-1683 of talin 1655–1822 were also used in the calculation. In all, 1000 initial complex structures were generated by rigid body energy minimization, and the best 200 by total energy were selected for torsion angle dynamics and subsequent Cartesian dynamics in an explicit water solvent. Default scaling for energy terms is as described previously (40).

RESULTS

Mapping the Domain Boundaries of the High Affinity F3 Binding Site in the Talin Rod—A fragment of the talin rod, spanning residues 1654–2344, has been shown to contain two non-overlapping binding sites for the talin F3 FERM subdomain (28). To further investigate the molecular basis of the interaction, we first determined the domain boundaries of the relevant section of the talin rod, which is made up of a total of 62 α-helices (Fig. 1A) arranged into ∼13 compact bundles or domains. We have previously established that the most C-terminal bundle (residues 2300–2482), which contains an actin binding site (20), is preceded by two five-helix domains (residues 1974–2140 and 2137–2294) that together make up the integrin binding site referred to as IBS2 (21). Working toward the N terminus, the next domain, which contains a vinculin binding site (VBS3), was thought to be a four-helix bundle (residues 1843–1973) (19), but we have recently found that it is more stable as a five-helix bundle (residues 1815–1973).4 This domain overlaps, by one helix, the F3 binding fragment identified by Goksoy et al. (28) (residues 1654–1848). To establish whether the preceding domain is also a five-helix bundle, we expressed residues 1655–1822, a region that is highly conserved in both talin1 and talin2 and across species (Fig. 1B). The protein was soluble, and its melting temperature, as determined by CD, was 65 °C, providing evidence for a stable fold. Moreover, the ¹H,¹⁵N HSQC spectrum showed good dispersion indicative of a well folded domain and with peak line widths consistent with a monomeric state.

Structure of Talin Residues 1655–1822—The solution structure of talin 1655–1822 was calculated from 5502 distance, and 257 dihedral angle restraints were determined using ¹³C,¹⁵N-labeled protein. The structure consists of five antiparallel amphipathic α-helices forming a bundle stabilized by hydrophobic interactions (Fig. 1, C and D). The loops between helices 1 and 2 and helices 4 and 5 are relatively long (9–10 residues), whereas those between helices 2 and 3 and 3 and 4 are shorter (4–5 residues). Two of the helices contain proline residues (Pro-1715 in helix 2 and Pro-1740 in helix 3) that introduce kinks in the helices; interestingly, these prolines are conserved among talin sequences (Fig. 1B). The topology of the bundle is similar to that seen in talin 482–655 (17) and the two bundles in talin 1974–2293, which make up IBS2 (21). The core is almost exclusively hydrophobic with a conserved phenylalanine (Phe-1738) surrounded by the hydrophobic side chains of Leu, Ile, and Val residues. The only non-hydrophobic residue in the core is a conserved threonine, Thr-1765. Unlike other talin bundles (17–20), there is no aromatic residue capping the end of the bundle. An interesting feature of the domain is that there is a hydrophobic patch on helices 2 and 3, including Leu-1698 and Leu-1743, that is masked by the long loop between helices 1 and 2, which contains several hydrophobic residues (including Ile-1693 and Leu-1687) that dock into this patch. It remains to be established whether this hydrophobic patch is a site for domain-domain interaction in the intact rod (17).

Talin 1655–1822 Interacts with the Talin F3 Domain—The interaction between the talin rod 1655–1822 five-helix bundle and the F3 FERM subdomain of the talin head was studied by collecting ¹H,¹⁵N HSQC spectra of ¹⁵N-labeled talin 1655–1822 in the presence of increasing concentrations of unlabeled F3 (Fig. 2A). A number of resonances showed progressive changes in chemical shift; an example is shown in Fig. 2B. Analysis of the chemical shift changes for five residues (1684, 1685, 1768, 1770, and 1772) yields a K_d for the complex of 11 μm (range 9–14 μm), in reasonable agreement with that (3.6 μm) reported for the 1654–1848 fragment (28). The weighted ¹H,¹⁵N chemical shifts in talin 1655–1822 induced by F3 are shown as a function of residue number in Fig. 2C and are mapped on the structure in Fig. 2, D and E. The binding site for F3 on talin 1655–1822 is fairly extensive but is centered on helix 4 and the C-terminal end of helix 1 of the five-helix bundle (Fig. 2E). The residues involved in the rod binding site are highly conserved across species (Fig. 1B). The results of the reverse experiment, adding increasing concentrations of unlabeled talin 1655–1822 to ¹⁵N-labeled F3, are shown in supplemental Fig. S1. The observed shifts are mapped onto a surface representation of F3 in Fig. 2F and are similar to those observed by Goksoy et al. (28) where a larger talin construct (1654–2344) was used.

Structure of the Complex between Talin 1655–1822 and Talin F3—Models of the complex were obtained using HAD-DOCK (40, 41) on the basis of chemical shift perturbation data and intermolecular NOEs. The latter were measured by collecting two ¹³C,¹⁵NF₁-filtered, F₃-edited NOESY-HSQC spectra, one of ¹³C,¹⁵N-labeled talin 1655–1822 in complex with the unlabeled talin F3 subdomain, and one of ¹³C,¹⁵N-labeled F3 in complex with unlabeled talin 1655–1822. Each NOESY spectrum contained more than 100 intermolecular cross-peaks, most of which could be assigned unambiguously; the two experiments were in good agreement with NOEs seen from talin 1655–1822 to F3 and vice versa. The intermolecular NOEs map to the ends of helices 1 and 4 of talin 1655–1822, consistent with the chemical shift mapping. For example, the signals of the aromatic ring of Tyr-377 of F3 exhibit large shifts on the addition of talin 1655–1822, and clear intermolecular NOEs are observed between its aromatic ring protons and the protons of Leu-1680, Val-1683, and Met-1759 of talin 1655–1822. The model was calculated based on rigid body docking of the two proteins because careful examination of the intramolecular NOEs showed that the core structures of the two proteins remained essentially unchanged on complex formation. The final model of the complex is shown in Fig. 3A.

The F3 binding site on talin 1655–1822 is a large elongated area (Figs. 2E and 3A) with two main interaction sites. Thus, Tyr-377 of F3 docks into a small hydrophobic pocket on talin 1655–1822 (Fig. 3B), whereas the F3 activation loop (residues 316–326) binds midway down the helical bundle centered around helix 4. The activation loop of F3 has a high content of positively charged residues, including Lys-316, Lys-318, Lys-320, Lys-322, and Lys-324, and is disordered in free F3. However, on binding talin 1655–1822, it becomes ordered, as indicated by the large chemical shift changes of residues in this region (Fig. 2F and supplemental Fig. S1), with a few residues broadening due to exchange between free and the bound states. The structure of the complex shows that the surface on 1655–1822 with which the activation loop interacts has complementary characteristics, with an overall negative charge, and with residues Asp-1763, Glu-1770, Glu-1798, and Glu-1805 all ideally placed to form electrostatic contacts with the basic residues in F3 (Fig. 3C). The side chain resonances of Asp-1763, Glu-1770, and Glu-1805 all broaden markedly upon the addition of F3, supporting their involvement in the interaction.

Mutations of Residues in Talin 1655–1822 That Contact the F3 Domain Markedly Reduce F3 Binding—To further investigate the interface between the two domains, we made a series of point mutants of talin 1655–1822 (S1684D, Q1764A, T1767A, T1767E, E1770A, and Y1777A) designed to disrupt the interaction with F3. These were based on the structure of the complex (Fig. 3A), the chemical shift mapping (Fig. 2C), and the sequence conservation between talins (Fig. 1B). Each mutant was expressed as an ¹⁵N-labeled polypeptide, and all mutants were judged to be correctly folded because they had well dispersed NMR spectra that strongly resembled that of the wild-type protein (data not shown). The most striking effect was seen with the E1770A mutant, which dramatically reduced F3 binding; no significant shifts were observed, even with a 10-fold excess of F3 (Fig. 4B and supplemental Fig. S2B). The chemical shifts of Glu-1770 are markedly affected by F3, and it is in an optimal position for an electrostatic contact to a residue in the activation loop of F3; from the structure of the complex, the most likely partner is Lys-318 or Lys-320. Alanine substitution of Gln-1764 and Tyr-1777 on helix 4, which are not in the binding interface, showed little or no effect on F3 binding (Fig. 4D).

The program NetPhos2.0 (42) predicts that several residues in the 1655–1822 bundle may be phosphorylated, including Thr-1767 and Ser-1684. Threonine 1767 on helix 1 is adjacent to Glu-1770 and may help to orient the side chain of the latter. Mutation of Thr-1767 to glutamate resulted in a large drop in affinity for F3 (20–30-fold based on NMR titration data); although the mutation completely abolished the interaction of F3 with helix 4, residues in helix 1 were still slightly perturbed (Fig. 4C and supplemental Fig. S2C). However, similar effects were seen with the T1767A mutant, so the data do not reflect a clear role for Thr-1767 phosphorylation in regulating the interaction between F3 and the rod domain. Serine 1684 has been reported to be phosphorylated in platelet talin (43) and is in close proximity to the binding pocket for Tyr-377 of F3 (Fig. 3B). However, a S1684D mutant had only very small effects on the interaction with F3 (Fig. 4D), suggesting that phosphorylation of this residue is also not involved in regulation of the interaction.

Mutations of Residues in Talin F3 That Contact the Talin 1655–1822 Domain Markedly Reduce Talin 1655–1822 Binding—A number of mutants of the talin F3 domain were also expressed in ¹⁵N-labeled form and assayed for binding to the talin 1655–1822 rod polypeptide by NMR (Fig. 4E). As noted above, Tyr-377 in F3 occupies a hydrophobic binding pocket on the surface of talin 1655–1822, as shown by intermolecular NOEs to residues Leu-1680, Val-1683, and Met-1759. Mutation of Tyr-377 to alanine resulted in an ∼5-fold decrease in binding affinity, consistent with its role in the complex interface. The structure of the talin F3-talin 1655–1822 complex also suggests a salt-bridge interaction between Lys-324 in F3 and Glu-1798 in the talin rod domain. In support of this prediction, Lys-324 shows a substantial chemical shift change upon binding talin 1655–1822 (supplemental Fig. S1), and the K324D mutation resulted in a large decrease in affinity (∼23-fold; Fig. 4E). Goksoy et al. (28) reported that mutation of M319A in F3 greatly (∼140-fold) decreased its affinity for the talin rod, and full-length M319A talin was twice as effective in activating αIIbβ3 expressed in Chinese hamster ovary cells as full-length wild-type talin. The authors concluded that the M319A mutation inhibits the talin head-rod interaction and results in a greater proportion of talin adopting the open, active, conformation (28). However, our data indicate that Met-319 is not directly involved in the talin F3-talin 1655–1822 interface; the side chain resonances do not shift upon complex formation, and no NOEs are observed from Met-319 to talin 1655–1822. Titration of the M319A F3 mutant with talin 1655–1822 showed that this mutation has a negligible effect on binding (Fig. 4E). It is notable that full-length M319A talin is more effective in activating αIIbβ3-integrin than wild-type talin head on its own (28), suggesting that the mutation must have effect(s) other than changing the conformational equilibrium. Indeed, we find that this mutation results in a slight increase in the affinity of the talin head for the β3-integrin cytoplasmic domain (K_d 225 ± 7 μm when compared with 273 ± 6 μm for the wild-type).

Talin 1655–1822 Competes with the Integrin β3-Tail for Binding to F3—Interactions between F3 and the membrane-proximal region of the β3-integrin tail (Fig. 5A) have previously been shown to be unique to talin and necessary for integrin activation (30). The structure of the complex shows that talin 1655–1822 appears to block the binding site in F3 for the membrane-proximal part of the β3-integrin tail, whereas leaving that for the NPXY part largely accessible (Fig. 5B). This is consistent with the results of competition and mutagenesis experiments with a much larger talin 1654–2344 construct and a β3-integrin-PIPKIγ chimeric peptide (28). We undertook experiments to establish whether the single talin domain 1655–1822 does indeed compete with the wild-type β3-integrin tail for binding to the F3 domain. The ¹H and ¹⁵N resonances of the β3-integrin tail have previously been assigned (29), and the positions of these peaks in a ¹H,¹⁵N HSQC spectrum could readily be followed on the addition of various talin domains (Fig. 5C). The addition of F3 caused large chemical shift perturbations both in the NPXY region (residues 744–747) and in the more membrane-proximal portions of the β3-tail. In contrast, the addition of talin 1655–1822 only led to very small perturbations, indicating the absence of any specific interaction between the talin rod construct and the β3-integrin tail. When the F3 domain was added in the presence of a 4-fold excess of talin 1655–1822, the chemical shift perturbations of the residues of the β3-integrin tail were substantially smaller than those observed with the F3 domain alone, indicating competition between the β3-integrin tail and talin 1655–1822 for binding to the F3 domain. This decrease in magnitude was global and was not specific to any one region of the integrin tail. As expected, the E1770A talin rod mutant, which binds F3 very weakly if at all, failed to compete with F3 for binding to the β3-integrin tail (Fig. 5C).

DISCUSSION

Early studies by Molony et al. (27) showed that talin can exist in both extended and globular forms and that the globular conformation is dependent on an interaction between the talin head and rod domains. It is now apparent from the recent NMR studies of Goksoy et al. (28) that this globular conformation is at least in part due to an interaction between the talin F3 FERM subdomain and residues 1654–2344 of the talin rod (K_d 0.6 μm). Within this region, the authors provided evidence for two F3 binding sites, one of which (residues 1654–1848) had a higher affinity for F3 (K_d 3.6 μm) than the other (residues 1984–2344; K_d ∼78 μm). We have now determined the authentic domain boundaries of the region that forms the high affinity site and determined the solution structure of this domain (residues 1655–1822), as well as a detailed model of its complex with the F3 domain. The second lower affinity site (1984–2344) identified by Goksoy et al. (28) spans several domains whose structures we have previously determined (1974–2139, 2140–2294, 2300–2541), but we have been unable to detect binding of F3 to these individual domains (data not shown). The fact that F3 binds more tightly to the larger construct spanning 1654–2344 (K_d 0.6 μm) suggests that although the primary F3 binding site in the talin rod spans residues 1655–1822 (K_d ∼9 μm), additional lower affinity interactions with other domains in the vicinity might increase the overall affinity of the head-rod interaction. It is also possible that other regions of the talin head might contribute to binding.

We have shown that the F3 binding surface on talin 1655–1822 is large, comprising two main areas (Fig. 3), one involving Tyr-377 of F3 docking into a small hydrophobic pocket at the top of the helical bundle and a second that involves basic residues in the activation loop of F3, which bind to a cluster of negatively charged residues on helix 4 of talin 1655–1822. Mutagenesis suggests that this helix 4 region is the more important in terms of binding energy because the point mutation E1770A leads to a very marked decrease in affinity. However, Tyr-377 may play a role in regulating binding because it is predicted to be a Src phosphorylation site (42). Although mutation of residue Tyr-377 to alanine showed only a modest decrease in affinity, introduction of a negatively charged phosphate group in this position could have a much greater effect given the hydrophobic nature of the binding pocket on talin 1655–1822.

By overlaying the model of the talin F3-talin 1655–1822 complex with that of F3 bound to a chimeric β3-integrin-PIPKIγ peptide (30), it is clear that the talin rod domain occupies a similar position on F3 to the β3-integrin tail (Fig. 5, A and B); the β3-integrin membrane-proximal region occupies a near equivalent position to helices 4 and 5 of talin 1655–1822. This explains why F3 cannot bind the β-integrin tail when it is involved in the head-tail interaction. Although the interaction region for both ligands on F3 is the same, the manner of binding is different; the talin F3-rod interaction is primarily governed by electrostatic interactions, whereas the talin F3-integrin interaction is primarily hydrophobic in nature. However, our data show that the binding site for the membrane-distal NPXY region of the integrin tail in F3 is not masked by the talin 1655–1822 rod domain, in agreement with the conclusions reached by Goksoy et al. (28), although steric clashes between integrin Trp-739 (a vital residue for talin binding) and talin Pro-1756 suggest that binding might be restricted. Significantly, the WVYSPLH sequence at the C terminus of PIPKIγ can bind to this same site in F3 (44, 45), and PIPKIγ has been shown to play a key role in the adhesion-dependent targeting of cytoplasmic talin, which is predicted to be in the autoinhibited form, to the plasma membrane (46, 47). The binding of talin 1655–1822 to F3 may also block the interaction of F3 and other regions of the talin FERM domain with the membrane. Lys-322, which lies in a loop between strands S1 and S2 of F3, is important in integrin activation, and it has been suggested that it interacts with acidic membrane phospholipids stabilizing the integrin-talin complex (30). The structure of the F3-rod domain complex indicates that this interaction will be blocked. Similarly, the basic surface on the F2 FERM subdomain may also interact with acidic membrane phospholipids, orientating the FERM domain at the membrane interface and facilitating integrin binding. On the basis of the structure of the F2,F3 double domain (48), the binding of the rod domain to F3 would be predicted to prevent such an interaction.

In conclusion, the talin interdomain complex described here provides a clear structural basis for talin autoinhibition. The focus now turns toward defining the mechanisms that lead to talin activation, and PIPKIγ (46, 47), the GTPase Rap1, and its binding partner Rap1-GTP-interacting adaptor molecule (RIAM) (16, 49) have all been implicated in this process.

Supplementary Material