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. 1989 Jan;63(1):216–225. doi: 10.1128/jvi.63.1.216-225.1989

Purification and properties of poliovirus RNA polymerase expressed in Escherichia coli.

S J Plotch 1, O Palant 1, Y Gluzman 1
PMCID: PMC247675  PMID: 2535728

Abstract

A cDNA clone encoding the RNA polymerase of poliovirus has been expressed in Escherichia coli under the transcriptional control of a T7 bacteriophage promoter. The poliovirus enzyme was designed to contain only a single additional amino acid, the N-terminal methionine. The recombinant enzyme has been purified to near homogeneity, and polyclonal antibodies have been prepared against it. The enzyme exhibits poly(A)-dependent oligo(U)-primed poly(U) polymerase activity as well as RNA polymerase activity. In the presence of an oligo(U) primer, the enzyme catalyzes the synthesis of a full-length copy of either poliovirus or globin RNA templates. In the absence of added primer, RNA products up to twice the length of the template are synthesized. When incubated in the presence of a single nucleoside triphosphate, [alpha-32P]UTP, the enzyme catalyzes the incorporation of radioactive label into template RNA. These results are discussed in light of previously proposed models of poliovirus RNA synthesis in vitro.

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Selected References

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  1. Adler C. J., Elzinga M., Wimmer E. The genome-linked protein of picornaviruses. VIII. Complete amino acid sequence of poliovirus VPg and carboxy-terminal analysis of its precursor, P3-9. J Gen Virol. 1983 Feb;64(Pt 2):349–355. doi: 10.1099/0022-1317-64-2-349. [DOI] [PubMed] [Google Scholar]
  2. Ambros V., Baltimore D. Protein is linked to the 5' end of poliovirus RNA by a phosphodiester linkage to tyrosine. J Biol Chem. 1978 Aug 10;253(15):5263–5266. [PubMed] [Google Scholar]
  3. Andrews N. C., Baltimore D. Lack of evidence for VPg priming of poliovirus RNA synthesis in the host factor-dependent in vitro replicase reaction. J Virol. 1986 Apr;58(1):212–215. doi: 10.1128/jvi.58.1.212-215.1986. [DOI] [PMC free article] [PubMed] [Google Scholar]
  4. Andrews N. C., Baltimore D. Purification of a terminal uridylyltransferase that acts as host factor in the in vitro poliovirus replicase reaction. Proc Natl Acad Sci U S A. 1986 Jan;83(2):221–225. doi: 10.1073/pnas.83.2.221. [DOI] [PMC free article] [PubMed] [Google Scholar]
  5. Andrews N. C., Levin D., Baltimore D. Poliovirus replicase stimulation by terminal uridylyl transferase. J Biol Chem. 1985 Jun 25;260(12):7628–7635. [PubMed] [Google Scholar]
  6. Baron M. H., Baltimore D. Anti-VPg antibody inhibition of the poliovirus replicase reaction and production of covalent complexes of VPg-related proteins and RNA. Cell. 1982 Oct;30(3):745–752. doi: 10.1016/0092-8674(82)90279-3. [DOI] [PubMed] [Google Scholar]
  7. Baron M. H., Baltimore D. In vitro copying of viral positive strand RNA by poliovirus replicase. Characterization of the reaction and its products. J Biol Chem. 1982 Oct 25;257(20):12359–12366. [PubMed] [Google Scholar]
  8. Baron M. H., Baltimore D. Purification and properties of a host cell protein required for poliovirus replication in vitro. J Biol Chem. 1982 Oct 25;257(20):12351–12358. [PubMed] [Google Scholar]
  9. Caliguiri L. A., Tamm I. Characterization of poliovirus-specific structures associated with cytoplasmic membranes. Virology. 1970 Sep;42(1):112–122. doi: 10.1016/0042-6822(70)90243-6. [DOI] [PubMed] [Google Scholar]
  10. Crowl R., Seamans C., Lomedico P., McAndrew S. Versatile expression vectors for high-level synthesis of cloned gene products in Escherichia coli. Gene. 1985;38(1-3):31–38. doi: 10.1016/0378-1119(85)90200-8. [DOI] [PubMed] [Google Scholar]
  11. Dasgupta A., Hollingshead P., Baltimore D. Antibody to a host protein prevents initiation by the poliovirus replicase. J Virol. 1982 Jun;42(3):1114–1117. doi: 10.1128/jvi.42.3.1114-1117.1982. [DOI] [PMC free article] [PubMed] [Google Scholar]
  12. Dasgupta A. Purification of host factor required for in vitro transcription of poliovirus RNA. Virology. 1983 Jul 15;128(1):245–251. doi: 10.1016/0042-6822(83)90335-5. [DOI] [PubMed] [Google Scholar]
  13. Dasgupta A., Zabel P., Baltimore D. Dependence of the activity of the poliovirus replicase on the host cell protein. Cell. 1980 Feb;19(2):423–429. doi: 10.1016/0092-8674(80)90516-4. [DOI] [PubMed] [Google Scholar]
  14. Etchison D., Ehrenfeld E. Comparison of replication complexes synthesizing poliovirus RNA. Virology. 1981 May;111(1):33–46. doi: 10.1016/0042-6822(81)90651-6. [DOI] [PubMed] [Google Scholar]
  15. Flanegan J. B., Baltimore D. Poliovirus-specific primer-dependent RNA polymerase able to copy poly(A). Proc Natl Acad Sci U S A. 1977 Sep;74(9):3677–3680. doi: 10.1073/pnas.74.9.3677. [DOI] [PMC free article] [PubMed] [Google Scholar]
  16. Flanegan J. B., Petterson R. F., Ambros V., Hewlett N. J., Baltimore D. Covalent linkage of a protein to a defined nucleotide sequence at the 5'-terminus of virion and replicative intermediate RNAs of poliovirus. Proc Natl Acad Sci U S A. 1977 Mar;74(3):961–965. doi: 10.1073/pnas.74.3.961. [DOI] [PMC free article] [PubMed] [Google Scholar]
  17. Flanegan J. B., Van Dyke T. A. Isolation of a soluble and template-dependent poliovirus RNA polymerase that copies virion RNA in vitro. J Virol. 1979 Oct;32(1):155–161. doi: 10.1128/jvi.32.1.155-161.1979. [DOI] [PMC free article] [PubMed] [Google Scholar]
  18. Hanecak R., Semler B. L., Anderson C. W., Wimmer E. Proteolytic processing of poliovirus polypeptides: antibodies to polypeptide P3-7c inhibit cleavage at glutamine-glycine pairs. Proc Natl Acad Sci U S A. 1982 Jul;79(13):3973–3977. doi: 10.1073/pnas.79.13.3973. [DOI] [PMC free article] [PubMed] [Google Scholar]
  19. Hey T. D., Richards O. C., Ehrenfeld E. Host factor-induced template modification during synthesis of poliovirus RNA in vitro. J Virol. 1987 Mar;61(3):802–811. doi: 10.1128/jvi.61.3.802-811.1987. [DOI] [PMC free article] [PubMed] [Google Scholar]
  20. Hey T. D., Richards O. C., Ehrenfeld E. Synthesis of plus- and minus-strand RNA from poliovirion RNA template in vitro. J Virol. 1986 Jun;58(3):790–796. doi: 10.1128/jvi.58.3.790-796.1986. [DOI] [PMC free article] [PubMed] [Google Scholar]
  21. Kitamura N., Semler B. L., Rothberg P. G., Larsen G. R., Adler C. J., Dorner A. J., Emini E. A., Hanecak R., Lee J. J., van der Werf S. Primary structure, gene organization and polypeptide expression of poliovirus RNA. Nature. 1981 Jun 18;291(5816):547–553. doi: 10.1038/291547a0. [DOI] [PubMed] [Google Scholar]
  22. Laemmli U. K. Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature. 1970 Aug 15;227(5259):680–685. doi: 10.1038/227680a0. [DOI] [PubMed] [Google Scholar]
  23. Larsen G. R., Dorner A. J., Harris T. J., Wimmer E. The structure of poliovirus replicative form. Nucleic Acids Res. 1980 Mar 25;8(6):1217–1229. doi: 10.1093/nar/8.6.1217. [DOI] [PMC free article] [PubMed] [Google Scholar]
  24. Lee Y. F., Nomoto A., Detjen B. M., Wimmer E. A protein covalently linked to poliovirus genome RNA. Proc Natl Acad Sci U S A. 1977 Jan;74(1):59–63. doi: 10.1073/pnas.74.1.59. [DOI] [PMC free article] [PubMed] [Google Scholar]
  25. Lubinski J. M., Kaplan G., Racaniello V. R., Dasgupta A. Mechanism of in vitro synthesis of covalently linked dimeric RNA molecules by the poliovirus replicase. J Virol. 1986 May;58(2):459–467. doi: 10.1128/jvi.58.2.459-467.1986. [DOI] [PMC free article] [PubMed] [Google Scholar]
  26. Lubinski J. M., Ransone L. J., Dasgupta A. Primer-dependent synthesis of covalently linked dimeric RNA molecules by poliovirus replicase. J Virol. 1987 Oct;61(10):2997–3003. doi: 10.1128/jvi.61.10.2997-3003.1987. [DOI] [PMC free article] [PubMed] [Google Scholar]
  27. Moffatt B. A., Studier F. W. T7 lysozyme inhibits transcription by T7 RNA polymerase. Cell. 1987 Apr 24;49(2):221–227. doi: 10.1016/0092-8674(87)90563-0. [DOI] [PubMed] [Google Scholar]
  28. Morrow C. D., Dasgupta A. Antibody to a synthetic nonapeptide corresponding to the NH2 terminus of poliovirus genome-linked protein VPg reacts with native VPg and inhibits in vitro replication of poliovirus RNA. J Virol. 1983 Nov;48(2):429–439. doi: 10.1128/jvi.48.2.429-439.1983. [DOI] [PMC free article] [PubMed] [Google Scholar]
  29. Morrow C. D., Gibbons G. F., Dasgupta A. The host protein required for in vitro replication of poliovirus is a protein kinase that phosphorylates eukaryotic initiation factor-2. Cell. 1985 Apr;40(4):913–921. doi: 10.1016/0092-8674(85)90351-4. [DOI] [PubMed] [Google Scholar]
  30. Morrow C. D., Hocko J., Navab M., Dasgupta A. ATP is required for initiation of poliovirus RNA synthesis in vitro: demonstration of tyrosine-phosphate linkage between in vitro-synthesized RNA and genome-linked protein. J Virol. 1984 May;50(2):515–523. doi: 10.1128/jvi.50.2.515-523.1984. [DOI] [PMC free article] [PubMed] [Google Scholar]
  31. Morrow C. D., Navab M., Peterson C., Hocko J., Dasgupta A. Antibody to poliovirus genome-linked protein (VPg) precipitates in vitro synthesized RNA attached to VPg-precursor polypeptide(s). Virus Res. 1984;1(2):89–100. doi: 10.1016/0168-1702(84)90066-2. [DOI] [PubMed] [Google Scholar]
  32. Morrow C. D., Warren B., Lentz M. R. Expression of enzymatically active poliovirus RNA-dependent RNA polymerase in Escherichia coli. Proc Natl Acad Sci U S A. 1987 Sep;84(17):6050–6054. doi: 10.1073/pnas.84.17.6050. [DOI] [PMC free article] [PubMed] [Google Scholar]
  33. Nomoto A., Detjen B., Pozzatti R., Wimmer E. The location of the polio genome protein in viral RNAs and its implication for RNA synthesis. Nature. 1977 Jul 21;268(5617):208–213. doi: 10.1038/268208a0. [DOI] [PubMed] [Google Scholar]
  34. Pallansch M. A., Kew O. M., Semler B. L., Omilianowski D. R., Anderson C. W., Wimmer E., Rueckert R. R. Protein processing map of poliovirus. J Virol. 1984 Mar;49(3):873–880. doi: 10.1128/jvi.49.3.873-880.1984. [DOI] [PMC free article] [PubMed] [Google Scholar]
  35. Pettersson R. F., Ambros V., Baltimore D. Identification of a protein linked to nascent poliovirus RNA and to the polyuridylic acid of negative-strand RNA. J Virol. 1978 Aug;27(2):357–365. doi: 10.1128/jvi.27.2.357-365.1978. [DOI] [PMC free article] [PubMed] [Google Scholar]
  36. Racaniello V. R., Baltimore D. Molecular cloning of poliovirus cDNA and determination of the complete nucleotide sequence of the viral genome. Proc Natl Acad Sci U S A. 1981 Aug;78(8):4887–4891. doi: 10.1073/pnas.78.8.4887. [DOI] [PMC free article] [PubMed] [Google Scholar]
  37. Richards O. C., Ehrenfeld E. Heterogeneity of the 3' end of minus-strand RNA in the poliovirus replicative form. J Virol. 1980 Nov;36(2):387–394. doi: 10.1128/jvi.36.2.387-394.1980. [DOI] [PMC free article] [PubMed] [Google Scholar]
  38. Richards O. C., Hey T. D., Ehrenfeld E. Poliovirus snapback double-stranded RNA isolated from infected HeLa cells is deficient in poly(A). J Virol. 1987 Jul;61(7):2307–2310. doi: 10.1128/jvi.61.7.2307-2310.1987. [DOI] [PMC free article] [PubMed] [Google Scholar]
  39. Richards O. C., Ivanoff L. A., Bienkowska-Szewczyk K., Butt B., Petteway S. R., Jr, Rothstein M. A., Ehrenfeld E. Formation of poliovirus RNA polymerase 3D in Escherichia coli by cleavage of fusion proteins expressed from cloned viral cDNA. Virology. 1987 Dec;161(2):348–356. doi: 10.1016/0042-6822(87)90127-9. [DOI] [PubMed] [Google Scholar]
  40. Rosenberg A. H., Lade B. N., Chui D. S., Lin S. W., Dunn J. J., Studier F. W. Vectors for selective expression of cloned DNAs by T7 RNA polymerase. Gene. 1987;56(1):125–135. doi: 10.1016/0378-1119(87)90165-x. [DOI] [PubMed] [Google Scholar]
  41. Rothberg P. G., Harris T. J., Nomoto A., Wimmer E. O4-(5'-uridylyl)tyrosine is the bond between the genome-linked protein and the RNA of poliovirus. Proc Natl Acad Sci U S A. 1978 Oct;75(10):4868–4872. doi: 10.1073/pnas.75.10.4868. [DOI] [PMC free article] [PubMed] [Google Scholar]
  42. Rothstein M. A., Richards O. C., Amin C., Ehrenfeld E. Enzymatic activity of poliovirus RNA polymerase synthesized in Escherichia coli from viral cDNA. Virology. 1988 Jun;164(2):301–308. doi: 10.1016/0042-6822(88)90542-9. [DOI] [PubMed] [Google Scholar]
  43. Semler B. L., Anderson C. W., Kitamura N., Rothberg P. G., Wishart W. L., Wimmer E. Poliovirus replication proteins: RNA sequence encoding P3-1b and the sites of proteolytic processing. Proc Natl Acad Sci U S A. 1981 Jun;78(6):3464–3468. doi: 10.1073/pnas.78.6.3464. [DOI] [PMC free article] [PubMed] [Google Scholar]
  44. Spector D. H., Baltimore D. Requirement of 3'-terminal poly(adenylic acid) for the infectivity of poliovirus RNA. Proc Natl Acad Sci U S A. 1974 Aug;71(8):2983–2987. doi: 10.1073/pnas.71.8.2983. [DOI] [PMC free article] [PubMed] [Google Scholar]
  45. Studier F. W., Moffatt B. A. Use of bacteriophage T7 RNA polymerase to direct selective high-level expression of cloned genes. J Mol Biol. 1986 May 5;189(1):113–130. doi: 10.1016/0022-2836(86)90385-2. [DOI] [PubMed] [Google Scholar]
  46. Takeda N., Kuhn R. J., Yang C. F., Takegami T., Wimmer E. Initiation of poliovirus plus-strand RNA synthesis in a membrane complex of infected HeLa cells. J Virol. 1986 Oct;60(1):43–53. doi: 10.1128/jvi.60.1.43-53.1986. [DOI] [PMC free article] [PubMed] [Google Scholar]
  47. Takeda N., Yang C. F., Kuhn R. J., Wimmer E. Uridylylation of the genome-linked protein of poliovirus in vitro is dependent upon an endogenous RNA template. Virus Res. 1987 Sep;8(3):193–204. doi: 10.1016/0168-1702(87)90015-3. [DOI] [PubMed] [Google Scholar]
  48. Takegami T., Kuhn R. J., Anderson C. W., Wimmer E. Membrane-dependent uridylylation of the genome-linked protein VPg of poliovirus. Proc Natl Acad Sci U S A. 1983 Dec;80(24):7447–7451. doi: 10.1073/pnas.80.24.7447. [DOI] [PMC free article] [PubMed] [Google Scholar]
  49. Takegami T., Semler B. L., Anderson C. W., Wimmer E. Membrane fractions active in poliovirus RNA replication contain VPg precursor polypeptides. Virology. 1983 Jul 15;128(1):33–47. doi: 10.1016/0042-6822(83)90316-1. [DOI] [PubMed] [Google Scholar]
  50. Toyoda H., Nicklin M. J., Murray M. G., Anderson C. W., Dunn J. J., Studier F. W., Wimmer E. A second virus-encoded proteinase involved in proteolytic processing of poliovirus polyprotein. Cell. 1986 Jun 6;45(5):761–770. doi: 10.1016/0092-8674(86)90790-7. [DOI] [PubMed] [Google Scholar]
  51. Toyoda H., Yang C. F., Takeda N., Nomoto A., Wimmer E. Analysis of RNA synthesis of type 1 poliovirus by using an in vitro molecular genetic approach. J Virol. 1987 Sep;61(9):2816–2822. doi: 10.1128/jvi.61.9.2816-2822.1987. [DOI] [PMC free article] [PubMed] [Google Scholar]
  52. Tuschall D. M., Hiebert E., Flanegan J. B. Poliovirus RNA-dependent RNA polymerase synthesizes full-length copies of poliovirion RNA, cellular mRNA, and several plant virus RNAs in vitro. J Virol. 1982 Oct;44(1):209–216. doi: 10.1128/jvi.44.1.209-216.1982. [DOI] [PMC free article] [PubMed] [Google Scholar]
  53. Van Dyke T. A., Flanegan J. B. Identification of poliovirus polypeptide P63 as a soluble RNA-dependent RNA polymerase. J Virol. 1980 Sep;35(3):732–740. doi: 10.1128/jvi.35.3.732-740.1980. [DOI] [PMC free article] [PubMed] [Google Scholar]
  54. Van Dyke T. A., Rickles R. J., Flanegan J. B. Genome-length copies of poliovirion RNA are synthesized in vitro by the poliovirus RNA-dependent RNA polymerase. J Biol Chem. 1982 Apr 25;257(8):4610–4617. [PubMed] [Google Scholar]
  55. Yogo Y., Teng M. H., Wimmer E. Poly(U) in poliovirus minus RNA is 5'-terminal. Biochem Biophys Res Commun. 1974 Dec 23;61(4):1101–1109. doi: 10.1016/s0006-291x(74)80397-9. [DOI] [PubMed] [Google Scholar]
  56. Yogo Y., Wimmer E. Polyadenylic acid at the 3'-terminus of poliovirus RNA. Proc Natl Acad Sci U S A. 1972 Jul;69(7):1877–1882. doi: 10.1073/pnas.69.7.1877. [DOI] [PMC free article] [PubMed] [Google Scholar]
  57. Young D. C., Dunn B. M., Tobin G. J., Flanegan J. B. Anti-VPg antibody precipitation of product RNA synthesized in vitro by the poliovirus polymerase and host factor is mediated by VPg on the poliovirion RNA template. J Virol. 1986 Jun;58(3):715–723. doi: 10.1128/jvi.58.3.715-723.1986. [DOI] [PMC free article] [PubMed] [Google Scholar]
  58. Young D. C., Tobin G. J., Flanegan J. B. Characterization of product RNAs synthesized in vitro by poliovirus RNA polymerase purified by chromatography on hydroxylapatite or poly(U) Sepharose. J Virol. 1987 Feb;61(2):611–614. doi: 10.1128/jvi.61.2.611-614.1987. [DOI] [PMC free article] [PubMed] [Google Scholar]
  59. Young D. C., Tuschall D. M., Flanegan J. B. Poliovirus RNA-dependent RNA polymerase and host cell protein synthesize product RNA twice the size of poliovirion RNA in vitro. J Virol. 1985 May;54(2):256–264. doi: 10.1128/jvi.54.2.256-264.1985. [DOI] [PMC free article] [PubMed] [Google Scholar]

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