Abstract
The variability of the attachment (G) proteins of 48 subgroup A isolates of respiratory syncytial virus (RSV) isolated over 38 years has been examined. Nucleotide sequences of two variable regions of the G protein genes were determined following amplification by PCR. The isolates showed temporal rather than geographical clustering, and there was evidence for progressive accumulation of amino acid changes at an average rate of approximately 0.25% per year estimated over the entire protein. The cocirculation of lineages of RSV at present appears to be the result of a process of evolution and survival of particular genotypes and the extinction of others. Analysis of reactivity of the isolates with monoclonal antibodies showed that their antigenic profiles closely paralleled their relatedness by nucleotide sequence, suggesting that antigenic drift due to immune selection may be occurring.
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- Anderson L. J., Hierholzer J. C., Tsou C., Hendry R. M., Fernie B. F., Stone Y., McIntosh K. Antigenic characterization of respiratory syncytial virus strains with monoclonal antibodies. J Infect Dis. 1985 Apr;151(4):626–633. doi: 10.1093/infdis/151.4.626. [DOI] [PubMed] [Google Scholar]
- Both G. W., Sleigh M. J., Cox N. J., Kendal A. P. Antigenic drift in influenza virus H3 hemagglutinin from 1968 to 1980: multiple evolutionary pathways and sequential amino acid changes at key antigenic sites. J Virol. 1983 Oct;48(1):52–60. doi: 10.1128/jvi.48.1.52-60.1983. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Buonagurio D. A., Nakada S., Desselberger U., Krystal M., Palese P. Noncumulative sequence changes in the hemagglutinin genes of influenza C virus isolates. Virology. 1985 Oct 30;146(2):221–232. doi: 10.1016/0042-6822(85)90006-6. [DOI] [PubMed] [Google Scholar]
- Cane P. A., Matthews D. A., Pringle C. R. Analysis of relatedness of subgroup A respiratory syncytial viruses isolated worldwide. Virus Res. 1992 Sep 1;25(1-2):15–22. doi: 10.1016/0168-1702(92)90096-r. [DOI] [PubMed] [Google Scholar]
- Cane P. A., Matthews D. A., Pringle C. R. Analysis of respiratory syncytial virus strain variation in successive epidemics in one city. J Clin Microbiol. 1994 Jan;32(1):1–4. doi: 10.1128/jcm.32.1.1-4.1994. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Cane P. A., Matthews D. A., Pringle C. R. Identification of variable domains of the attachment (G) protein of subgroup A respiratory syncytial viruses. J Gen Virol. 1991 Sep;72(Pt 9):2091–2096. doi: 10.1099/0022-1317-72-9-2091. [DOI] [PubMed] [Google Scholar]
- Cane P. A., Pringle C. R. Molecular epidemiology of respiratory syncytial virus: rapid identification of subgroup A lineages. J Virol Methods. 1992 Dec 1;40(3):297–306. doi: 10.1016/0166-0934(92)90088-u. [DOI] [PubMed] [Google Scholar]
- Cane P. A., Pringle C. R. Respiratory syncytial virus heterogeneity during an epidemic: analysis by limited nucleotide sequencing (SH gene) and restriction mapping (N gene). J Gen Virol. 1991 Feb;72(Pt 2):349–357. doi: 10.1099/0022-1317-72-2-349. [DOI] [PubMed] [Google Scholar]
- Collins P. L., Olmsted R. A., Johnson P. R. The small hydrophobic protein of human respiratory syncytial virus: comparison between antigenic subgroups A and B. J Gen Virol. 1990 Jul;71(Pt 7):1571–1576. doi: 10.1099/0022-1317-71-7-1571. [DOI] [PubMed] [Google Scholar]
- Fitch W. M., Leiter J. M., Li X. Q., Palese P. Positive Darwinian evolution in human influenza A viruses. Proc Natl Acad Sci U S A. 1991 May 15;88(10):4270–4274. doi: 10.1073/pnas.88.10.4270. [DOI] [PMC free article] [PubMed] [Google Scholar]
- García-Barreno B., Palomo C., Peñas C., Delgado T., Perez-Breña P., Melero J. A. Marked differences in the antigenic structure of human respiratory syncytial virus F and G glycoproteins. J Virol. 1989 Feb;63(2):925–932. doi: 10.1128/jvi.63.2.925-932.1989. [DOI] [PMC free article] [PubMed] [Google Scholar]
- García-Barreno B., Portela A., Delgado T., López J. A., Melero J. A. Frame shift mutations as a novel mechanism for the generation of neutralization resistant mutants of human respiratory syncytial virus. EMBO J. 1990 Dec;9(12):4181–4187. doi: 10.1002/j.1460-2075.1990.tb07642.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
- García O., Martín M., Dopazo J., Arbiza J., Frabasile S., Russi J., Hortal M., Perez-Breña P., Martínez I., García-Barreno B. Evolutionary pattern of human respiratory syncytial virus (subgroup A): cocirculating lineages and correlation of genetic and antigenic changes in the G glycoprotein. J Virol. 1994 Sep;68(9):5448–5459. doi: 10.1128/jvi.68.9.5448-5459.1994. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Gimenez H. B., Hardman N., Keir H. M., Cash P. Antigenic variation between human respiratory syncytial virus isolates. J Gen Virol. 1986 May;67(Pt 5):863–870. doi: 10.1099/0022-1317-67-5-863. [DOI] [PubMed] [Google Scholar]
- Henrickson K. J., Savatski L. L. Genetic variation and evolution of human parainfluenza virus type 1 hemagglutinin neuraminidase: analysis of 12 clinical isolates. J Infect Dis. 1992 Nov;166(5):995–1005. doi: 10.1093/infdis/166.5.995. [DOI] [PubMed] [Google Scholar]
- Hetherington S. V., Watson A. S., Scroggs R. A., Portner A. Human parainfluenza virus type 1 evolution combines cocirculation of strains and development of geographically restricted lineages. J Infect Dis. 1994 Feb;169(2):248–252. doi: 10.1093/infdis/169.2.248. [DOI] [PubMed] [Google Scholar]
- Higgins D. G., Sharp P. M. CLUSTAL: a package for performing multiple sequence alignment on a microcomputer. Gene. 1988 Dec 15;73(1):237–244. doi: 10.1016/0378-1119(88)90330-7. [DOI] [PubMed] [Google Scholar]
- Johnson P. R., Collins P. L. The 1B (NS2), 1C (NS1) and N proteins of human respiratory syncytial virus (RSV) of antigenic subgroups A and B: sequence conservation and divergence within RSV genomic RNA. J Gen Virol. 1989 Jun;70(Pt 6):1539–1547. doi: 10.1099/0022-1317-70-6-1539. [DOI] [PubMed] [Google Scholar]
- Johnson P. R., Spriggs M. K., Olmsted R. A., Collins P. L. The G glycoprotein of human respiratory syncytial viruses of subgroups A and B: extensive sequence divergence between antigenically related proteins. Proc Natl Acad Sci U S A. 1987 Aug;84(16):5625–5629. doi: 10.1073/pnas.84.16.5625. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Korber B. T., MacInnes K., Smith R. F., Myers G. Mutational trends in V3 loop protein sequences observed in different genetic lineages of human immunodeficiency virus type 1. J Virol. 1994 Oct;68(10):6730–6744. doi: 10.1128/jvi.68.10.6730-6744.1994. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Luoh S. M., McGregor M. W., Hinshaw V. S. Hemagglutinin mutations related to antigenic variation in H1 swine influenza viruses. J Virol. 1992 Feb;66(2):1066–1073. doi: 10.1128/jvi.66.2.1066-1073.1992. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Mufson M. A., Orvell C., Rafnar B., Norrby E. Two distinct subtypes of human respiratory syncytial virus. J Gen Virol. 1985 Oct;66(Pt 10):2111–2124. doi: 10.1099/0022-1317-66-10-2111. [DOI] [PubMed] [Google Scholar]
- Nichol S. T., Rowe J. E., Fitch W. M. Punctuated equilibrium and positive Darwinian evolution in vesicular stomatitis virus. Proc Natl Acad Sci U S A. 1993 Nov 15;90(22):10424–10428. doi: 10.1073/pnas.90.22.10424. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Norrby E., Mufson M. A., Alexander H., Houghten R. A., Lerner R. A. Site-directed serology with synthetic peptides representing the large glycoprotein G of respiratory syncytial virus. Proc Natl Acad Sci U S A. 1987 Sep;84(18):6572–6576. doi: 10.1073/pnas.84.18.6572. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Pyhälä R., Ikonen N., Forsten T., Alanko S., Kinnunen L. Evolution of the HA1 domain of human influenza A (H1N1) virus: loss of glycosylation sites and occurrence of herald and conserved strains. J Gen Virol. 1995 Jan;76(Pt 1):205–210. doi: 10.1099/0022-1317-76-1-205. [DOI] [PubMed] [Google Scholar]
- Raymond F. L., Caton A. J., Cox N. J., Kendal A. P., Brownlee G. G. The antigenicity and evolution of influenza H1 haemagglutinin, from 1950-1957 and 1977-1983: two pathways from one gene. Virology. 1986 Jan 30;148(2):275–287. doi: 10.1016/0042-6822(86)90325-9. [DOI] [PubMed] [Google Scholar]
- Rueda P., Delgado T., Portela A., Melero J. A., García-Barreno B. Premature stop codons in the G glycoprotein of human respiratory syncytial viruses resistant to neutralization by monoclonal antibodies. J Virol. 1991 Jun;65(6):3374–3378. doi: 10.1128/jvi.65.6.3374-3378.1991. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Simmonds P., McOmish F., Yap P. L., Chan S. W., Lin C. K., Dusheiko G., Saeed A. A., Holmes E. C. Sequence variability in the 5' non-coding region of hepatitis C virus: identification of a new virus type and restrictions on sequence diversity. J Gen Virol. 1993 Apr;74(Pt 4):661–668. doi: 10.1099/0022-1317-74-4-661. [DOI] [PubMed] [Google Scholar]
- Sullender W. M., Mufson M. A., Anderson L. J., Wertz G. W. Genetic diversity of the attachment protein of subgroup B respiratory syncytial viruses. J Virol. 1991 Oct;65(10):5425–5434. doi: 10.1128/jvi.65.10.5425-5434.1991. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Wertz G. W., Collins P. L., Huang Y., Gruber C., Levine S., Ball L. A. Nucleotide sequence of the G protein gene of human respiratory syncytial virus reveals an unusual type of viral membrane protein. Proc Natl Acad Sci U S A. 1985 Jun;82(12):4075–4079. doi: 10.1073/pnas.82.12.4075. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Yamashita M., Krystal M., Fitch W. M., Palese P. Influenza B virus evolution: co-circulating lineages and comparison of evolutionary pattern with those of influenza A and C viruses. Virology. 1988 Mar;163(1):112–122. doi: 10.1016/0042-6822(88)90238-3. [DOI] [PubMed] [Google Scholar]
- van Wyke Coelingh K. L., Winter C. C., Murphy B. R. Nucleotide and deduced amino acid sequence of hemagglutinin-neuraminidase genes of human type 3 parainfluenza viruses isolated from 1957 to 1983. Virology. 1988 Jan;162(1):137–143. doi: 10.1016/0042-6822(88)90402-3. [DOI] [PubMed] [Google Scholar]