The scope of the journal encompasses studies of microbiomes colonizing humans, animals, plants or the environment, both built and natural or manipulated, as in agriculture. Studies on the development and application of meta-omics approaches or novel bioinformatics tools, on community/host interaction with emphasis on structure-function relationship that would lead to substantial advances in the field will be considered for publication. Microbiome is especially interested in studies that go beyond descriptive omics surveys and include experimental or theoretical approaches that mechanistically support proposed microbiome functions, and establish, if possible, cause and effect relationships. Studies of individual microbial isolates/species in vivo or in laboratory cultures without exploring the mechanisms by which they affect the host or the complex microbiome structures and functions will not be considered.
Through this collection of literature Microbiome hopes to integrate researchers with common scientific objectives across a broad cross-section of sub-disciplines within microbial ecology.
Microbiome works closely with its sister journals Environmental Microbiome and Animal Microbiome, and with BMC Microbiology. If a submission is more appropriate for one of these journals, the opportunity to transfer the manuscript files to these journal will be offered.
BEFORE YOU SUBMIT: Please read the Aims & Scope, Submission Guidelines carefully, particularly in relation to Microbiome's data availability policies.
A cross journal collection that will cover various aspects of maintaining or enhancing food production, sustainability and security from a microbiology perspective.
A cross journal collection that will cover recent advancements in the understanding of evolution of microbiome consortia, the latest signature microbiome-based development, and biotechnological solutions for sustainable environmental management and bioproduction systems in the wake of emerging challenges, including climate change.
A cross journal collection to bring together new original research and cutting-edge reviews of new insights into the mechanistic basis for interactions between microbial components of the microbiome across species, retroviruses and microbial niches. 
A cross-journal series looking at the mechanistic adaptation of any species which thrive in extreme environments.
This cross-journal collection brings together both human and animal studies covering all aspects of the microbiota-gut-brain axis’ role in health and disease, as well as its therapeutic potential.
