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  1. CoverM CoverM Public

    Read coverage calculator for metagenomics

    Rust 305 31

  2. kingfisher-download kingfisher-download Public

    Easier download/extract of FASTA/Q read data and metadata from the ENA, NCBI, AWS or GCP.

    Python 246 38

  3. singlem singlem Public

    Novelty-inclusive microbial community profiling of shotgun metagenomes

    Python 133 16

  4. rhysnewell/Lorikeet rhysnewell/Lorikeet Public

    Strain resolver for metagenomics

    Rust 68 9

  5. rhysnewell/aviary rhysnewell/aviary Public

    A hybrid assembly and MAG recovery pipeline (and more!)

    Python 82 12

  6. AroneyS/binchicken AroneyS/binchicken Public

    Bin Chicken - recovery of low abundance and taxonomically targeted metagenome assembled genomes (MAGs) through strategic coassembly

    Python 13