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substitute was one of the bottle neck.
It called strlen before memcpy.
We can remove the strlen invocation safely.
The original code:
$ xargs cat < /tmp/list > /dev/null; time ./ctags -L - < /tmp/list
./ctags -L - < /tmp/list 97.39s user 4.72s system 97% cpu 1:45.09 total
With this change:
$ xargs cat < /tmp/list > /dev/null; time ./ctags -L - < /tmp/list
./ctags -L - < /tmp/list 87.24s user 4.68s system 97% cpu 1:34.28 total
About 10% faster!