Official and maintained implementation of the paper "Attention-Based Transformers for Instance Segmentation of Cells in Microstructures" [BIBM 2020].
An Artificial Life simulator for Investigating Noogenesis
Modular cloning simulation with the MoClo framework in Python
This repository contains the different resources derived or generated using ComPath
Integration of pathway-related information from Reactome in BEL
SigMat: A Classification Scheme for Gene Signature Matching
Genome scale metabolic model for Ogataea polymorpha NCYC495.
The FALCONET R package enables to build and visualise metabolic maps of GEM automatically with aid of cellDesigner 4.4 and R platform
Resources derived from PathMe
pyEnGNet: optimized reconstruction of gene co-expression networks using multi-GPU
This Github repository holds the supporting documents for the paper "Evaluation of search-enabled Pre-trained Large Language Models on retrieval tasks for the PubChem Database"
Automatic rule-based modeling of metabolism, protein-protein interactions, and regulation of gene expression
A repository containing abstract classes that Bio2BEL repos should extend to be adapted to the Compath environment
A rerun of the simulations of a Goldbeter paper
An application of the rational enrichment workflow to ten subgraphs from NeuroMMSig for the Human Brain Pharmacome project (https://pharmacome.scai.fraunhofer.de)
A probabilistic programing library empowered with jax to speed up large simulations (still in progress!)
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