Nextflow pipeline for analysis of direct RNA Nanopore reads

A collection of unexpected challenges and learnings with nextflow and nf-core.

TransPi – a comprehensive TRanscriptome ANalysiS PIpeline for de novo transcriptome assembly

NeoFlow: a proteogenomics pipeline for neoantigen discovery

A bioinformatics best-practice analysis pipeline for calling structural variants (SVs), copy number variants (CNVs) and repeat region expansions (RREs) from short DNA reads

Nextflow pipeline for genome annotation of protein-coding genes

A pipeline for comprehensive genomic analyses of Mycobacterium tuberculosis with a focus on clinical decision making as well as research

A proof of concept daisy-chaining Nextflow workflows

Sanger Cellular Genetics single-cell ATAC-seq pipeline.

Flujos de trabajos desarrollados y automatizados en el Inmegen para el procesamiento de datos genómicos y transcriptómicos.

Template for creating Nextflow DSL2 pipelines

Bacterial Assembly and Antimicrobial Resistance Genes In NextFlow

Python library to execute batches of jobs using nextflow.

A Nextflow pipeline demonstrating how to train graph neural networks for gene regulatory network reconstruction using DREAM5 data.

Nextflow pipeline for extracting and counting clonal barcodes

Nextflow wrapper for the dragonflye assembler, with additional QC

A Nextflow pipeline to experiment with DSL2 + Zero Mess

Mbovpan is a nextflow bioinformatic pipeline for Mycobacterium bovis pangenome analysis. The goal of Mbovpan is to help researchers to study the M. bovis pangenome in an automatic and easy way.

Nextflow pipeline to detect and classify microbial reads in sequencing data from human samples.