Bioinformatics on GCP, AWS or Azure

GitHub for the SIB courses NGS - Genome variant analysis

Sentieon DNAseq

Variant calling pipeline for germline enrichment NGS data

Some workflows I wrote for my phd projects

sysadmin tasks made easier

Bash scripts for fastq to vcf pipeline, written for USyd Artemis HPC.

Toolbox for work with CloneHD application

Miscellaneous pipelines for genomics computation analysis in a SGE HPC platform.

simple pipeline for processing exome sequencing data using BWA and GATK4

Bash and Python pipelines and scripts from the Invertebrates & Microbiology Group at the Queensland University of Technology to help make data analysis easy.

GATK WGS workflow

Implementation of WGS genotyping pipeline for EFIGA FBS FAMILY dataset

Dockerized version of the GATK 3.7 best practises pipeline for whole genomes.

Project for the course of Computational Human Genomics, held by Francesca Demichelis (a.y. 2021-2022) @ University of Trento