Brain Imaging Data Structure (BIDS) Specification

Python tools for querying and manipulating BIDS datasets.

Reorganising NIfTI files from dcm2niix into the Brain Imaging Data Structure

Automatically process entire electrophysiological datasets using MNE-Python.

Preprocessing of diffusion MRI

MNE-BIDS is a Python package that allows you to read and write BIDS-compatible datasets with the help of MNE-Python.

BIDScoin converts your source-level neuroimaging data to BIDS

Temporal Network Tools

ENIGMA HALFpipe is a user-friendly software that facilitates reproducible analysis of fMRI data

dMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse dMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.

Python3 library to format physiological files in BIDS. At the moment, it supports Acqknowledge and Labchart. BrainHack participants, check the issues with the BrainHack labels!

Robust Eye Movement Detection for Natural Viewing

Generate subject connectomes from raw BIDS data & perform inter-subject connection density normalisation, using the MRtrix3 software package.

BrkRaw: A comprehensive tool to access raw Bruker Biospin MRI data

Small Animal Magnetic Resonance Imaging via Python.

BIDS app wrapping recon-all from FreeSurfer

A BIDS App for minimal preprocessing using the HCP Pipelines

Resting state HRF estimation from BOLD-fMRI signal

Tools for dealing with neuroimaging data in the BIDS structure

PET2BIDS helps you convert your PET data into BIDS! raw PET scanner files (e.g. ecat, dicom) and additional side files like .e.g excel sheets -- paper @Joss https://doi.org/10.21105/joss.06067