-
Notifications
You must be signed in to change notification settings - Fork 8
format
Téo Lemane edited this page Jul 29, 2021
·
3 revisions
kmtricks format
allows to split Bloom matrices into sample-specific Bloom filters. It can be run only after run kmtricks pipeline --until merge --mode hash:bft:bin
.
kmtricks format v1.0.0
DESCRIPTION
Convert Bloom matrices to sample-specific Bloom filters.
USAGE
kmtricks format --run-dir <DIR> [--id <STR>] [--out-format <STR>] [-t/--threads <INT>] [-v/--verbose <STR>]
[--from-vec] [--from-hash] [--cpr-in] [--clear] [-h/--help] [--version]
OPTIONS
[global]
--run-dir - kmtricks runtime directory.
--id - Sample id {all}
--out-format - bloom filters format. [sdsl|howdesbt] {howdesbt}
--from-vec - build bloom filters from bit-vectors. (kmtricks pipeline --skip-merge) [⚑]
--from-hash - build bloom filters from counted hashes. [⚑]
--cpr-in - compressed inputs. [⚑]
--clear - clear input files. [⚑]
[common]
-t --threads - number of threads. {8}
-h --help - show this message and exit. [⚑]
--version - show version and exit. [⚑]
-v --verbose - verbosity level [debug|info|warning|error]. {info}