Open
Description
It looks like the pubmed parser doesn't support the pubmed baseline files?
I get the error below. It also doesn't look like the test file is using a similar file format.
pubmed_dict = pp.parse_pubmed_xml('./data/pubmed20n1015.xml') # dictionary output---------------------------------------------------------------------------
AttributeError Traceback (most recent call last)
<ipython-input-5-2b4cea8c6fb9> in <module>
----> 1 pubmed_dict = pp.parse_pubmed_xml('./data/pubmed20n1015.xml') # dictionary output
~/anaconda3/envs/python3/lib/python3.6/site-packages/pubmed_parser/pubmed_oa_parser.py in parse_pubmed_xml(path, include_path, nxml)
155 journal = ""
156
--> 157 dict_article_meta = parse_article_meta(tree)
158 pub_year_node = tree.find(".//pub-date/year")
159 pub_year = pub_year_node.text if pub_year_node is not None else ""
~/anaconda3/envs/python3/lib/python3.6/site-packages/pubmed_parser/pubmed_oa_parser.py in parse_article_meta(tree)
67 """
68 article_meta = tree.find(".//article-meta")
---> 69 pmid_node = article_meta.find('article-id[@pub-id-type="pmid"]')
70 pmc_node = article_meta.find('article-id[@pub-id-type="pmc"]')
71 pub_id_node = article_meta.find('article-id[@pub-id-type="publisher-id"]')
AttributeError: 'NoneType' object has no attribute 'find'