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Linking to svviz2
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nspies authored Aug 18, 2018
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Author: Noah Spies

Latest version: |pypi|_
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**svviz version 2.0** is available here: `https://github.com/nspies/svviz2 <https://github.com/nspies/svviz2>`_ with `documentation here <https://svviz2.readthedocs.io/en/latest/>`_. For most purposes, I recommend using the new version.

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``svviz`` visualizes high-throughput sequencing data relevant to a structural variant. Only reads supporting the variant or the reference allele will be shown. svviz can operate in both an interactive web browser view to closely inspect individual variants, or in batch mode, allowing multiple variants (annotated in a VCF file) to be analyzed simultaneously.

Visit the `project site <http://svviz.github.io/svviz/>`_ for a tour of the features and example output.


.. |pypi| image:: https://img.shields.io/pypi/v/svviz.png
.. _pypi: http://svviz.readthedocs.io/en/latest/install.html


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svviz has been `published in Bioinformatics <http://dx.doi.org/10.1093/bioinformatics/btv478>`_. If you found svviz useful for your research, please cite svviz as follows:

Spies N, Zook JM, Salit M, Sidow A. 2015. svviz: a read viewer for validating structural variants. Bioinformatics doi:bioinformatics/btv478.
Spies N, Zook JM, Salit M, Sidow A. 2015. svviz: a read viewer for validating structural variants. Bioinformatics doi:bioinformatics/btv478.

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