{
    "Run with profile test | --save_mapped | skip QC/recal/md": {
        "content": [
            10,
            {
                "BAM_TO_CRAM_MAPPING": {
                    "samtools": 1.21
                },
                "BWAMEM1_MEM": {
                    "bwa": "0.7.18-r1243-dirty",
                    "samtools": 1.2
                },
                "INDEX_MERGE_BAM": {
                    "samtools": 1.21
                },
                "MERGE_BAM": {
                    "samtools": 1.21
                },
                "Workflow": {
                    "nf-core/sarek": "v3.5.0"
                }
            },
            [
                "csv",
                "csv/mapped.csv",
                "pipeline_info",
                "pipeline_info/nf_core_sarek_software_mqc_versions.yml",
                "preprocessing",
                "preprocessing/mapped",
                "preprocessing/mapped/test",
                "preprocessing/mapped/test/test.sorted.cram",
                "preprocessing/mapped/test/test.sorted.cram.crai",
                "reference"
            ],
            [

            ],
            [

            ]
        ],
        "meta": {
            "nf-test": "0.9.0",
            "nextflow": "24.09.0"
        },
        "timestamp": "2024-10-08T09:53:32.063494"
    }
}