Closed
Description
Hi. I had a case that I needed to lower the score threshold of BWA-mem. The default is T=30 but all reads were filtered out and I had to set the T=15. Can we expose the T option in the nextflow run options?
Hi. I had a case that I needed to lower the score threshold of BWA-mem. The default is T=30 but all reads were filtered out and I had to set the T=15. Can we expose the T option in the nextflow run options?