After using the atacseq pipeline, I checked the multiqc report and find relevant information recorded such as reference genome. The paths to bed/gtf files are included but a useful piece of information to include would be the annotation version used. The pipeline uses iGenomes so I checked the README in the Annotation subdirectory and found the included files were release-81 (2015).

For downstream analysis, this information would be nice to include in the multiqc report if possible.

Thanks,

Chris