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Nextstrain

Real-time tracking of pathogen evolution

158 followers
https://nextstrain.org
@nextstrain
@nextstrain@mstdn.science

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ncov ncov Public

Nextstrain build for novel coronavirus SARS-CoV-2

Python 1.4k 403
augur augur Public

Pipeline components for real-time phylodynamic analysis

Python 268 129
auspice auspice Public

Web app for visualizing pathogen evolution

JavaScript 292 163

Repositories

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Last updated Name Stars

Showing 10 of 89 repositories

nextstrain.org Public
The Nextstrain website

nextstrain/nextstrain.org’s past year of commit activity

JavaScript 88 AGPL-3.0 49 74 (2 issues need help) 10 Updated Sep 27, 2024
mpox Public
Nextstrain build for mpox virus

nextstrain/mpox’s past year of commit activity

Python 42 MIT 19 23 9 Updated Sep 27, 2024
ncov Public
Nextstrain build for novel coronavirus SARS-CoV-2

nextstrain/ncov’s past year of commit activity

Python 1,353 MIT 403 72 26 Updated Sep 27, 2024
augur Public
Pipeline components for real-time phylodynamic analysis

nextstrain/augur’s past year of commit activity

Python 268 AGPL-3.0 129 233 (1 issue needs help) 60 Updated Sep 26, 2024
WNV Public
the repository used to build West Nile Virus for nextstrain

nextstrain/WNV’s past year of commit activity

Python 2 0 3 2 Updated Sep 26, 2024
fauna Public
RethinkDB database to support real-time virus analysis

nextstrain/fauna’s past year of commit activity

Python 33 AGPL-3.0 13 19 9 Updated Sep 26, 2024
yellow-fever Public

nextstrain/yellow-fever’s past year of commit activity

Python 0 4 1 0 Updated Sep 26, 2024
nipah Public

nextstrain/nipah’s past year of commit activity

Python 0 0 1 0 Updated Sep 26, 2024
oropouche Public
Oropouche Nextstrain build

nextstrain/oropouche’s past year of commit activity

Python 0 0 2 1 Updated Sep 26, 2024
nextclade_data Public
Datasets for https://github.com/nextstrain/nextclade

nextstrain/nextclade_data’s past year of commit activity

Python 31 25 7 14 Updated Sep 25, 2024

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