Benchmarking of the LIANA-Tensor-cell2cell pipeline. Associated with the manuscript: "Combining LIANA and Tensor-cell2cell to decipher cell-cell communication across multiple samples".
- For benchmarking of batch effects, see:
notebooks/batch_correction - For benchmarking of missing indices, see:
notebooks/missing_indices - For a full description of motivation, methods, and results, see:
Benchmarking_Description.pdf - The main repository can be found at: https://github.com/saezlab/ccc_protocols.git
- The online tutorials can be found at: https://ccc-protocols.readthedocs.io/