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base repository: fritzsedlazeck/Sniffles
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base: v2.5.2
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head repository: fritzsedlazeck/Sniffles
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compare: v2.5.3
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  • 18 commits
  • 10 files changed
  • 4 contributors

Commits on Nov 14, 2024

  1. Updated max VAF for mosaic to avoid the genotype gray area

    @lfpaulin
    lfpaulin authored Nov 14, 2024
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Commits on Nov 15, 2024

  1. Delete .github/workflows/release.yaml

    @lfpaulin
    lfpaulin authored Nov 15, 2024
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  2. Create release.yaml

    @lfpaulin
    lfpaulin authored Nov 15, 2024
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Commits on Nov 18, 2024

  1. Merge pull request #75 from fritzsedlazeck/mosaic_vaf-patch 

    Updated max VAF for mosaic to avoid the genotype gray area
    @hermannromanek
    hermannromanek authored Nov 18, 2024
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  2. Merge branch 'refs/heads/master-pub' into master-priv

    Hermann Romanek committed Nov 18, 2024
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Commits on Nov 27, 2024

  1. dont discard workers on missing heartbeats

    Hermann Romanek committed Nov 27, 2024
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Commits on Nov 28, 2024

  1. #530 - fixed genotyping of deletions

    Hermann Romanek committed Nov 28, 2024
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  2. #530 - fixed genotyping of deletions 

    (cherry picked from commit 3fb4494)
    Hermann Romanek committed Nov 28, 2024
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Commits on Dec 5, 2024

  1. Updated max VAF for mosaic to avoid the genotype gray area 

    (cherry picked from commit 5e17cbf)
    @lfpaulin
    lfpaulin authored and Hermann Romanek committed Dec 5, 2024
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  2. dont discard workers on missing heartbeats 

    (cherry picked from commit 69e044c)
    Hermann Romanek committed Dec 5, 2024
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Commits on Dec 6, 2024

  1. Added --combine-support-threshold

    Hermann Romanek committed Dec 6, 2024
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Commits on Dec 9, 2024

  1. Single sample SNF to VCF allow the usage of no-qc flag

    @lfpaulin
    lfpaulin committed Dec 9, 2024
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Commits on Dec 16, 2024

  1. #505, #77 (p) - added --re-qc parameter

    Hermann Romanek committed Dec 16, 2024
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  2. DUP coverage filter bug (reported as DEL)

    @lfpaulin
    lfpaulin committed Dec 16, 2024
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  3. Merge remote-tracking branch 'origin/master'

    @lfpaulin
    lfpaulin committed Dec 16, 2024
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  4. Updated version to 2.5.3

    Hermann Romanek committed Dec 16, 2024
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  5. Merge branch 'refs/heads/master-priv' into master-pub

    Hermann Romanek committed Dec 16, 2024
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  6. Update setup.cfg 

    Python requirement
    @lfpaulin
    lfpaulin authored Dec 16, 2024
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