No valid choice in the pipeline parameters for hybrid strategies and problem with -c config #36
Closed
Description
Hi, thanks for the impressive work and pipeline
So I'm trying to use it on our data, and getting a couple of errors for starters.
If I ran the pipeline with --input XXXX.yml and --hybrid_strategy 2, I get the error:
Launching
https://github.com/fmalmeida/mpgap
[golden_bell] DSL2 - revision: c1d2ab6 [master]
ERROR: Validation of pipeline parameters failed!
- --hybrid_strategy: '2' is not a valid choice (Available choices: 1, 2, both)
- --hybrid_strategy: '2' is not a valid choice (Available choices: 1, 2, both)
both seems to be working with this syntaxis, but not 1 nor 2
If I ran the pipeline trying to provide the config file with -c, I get the error
N E X T F L O W ~ version 22.04.5
Unknown method invocationcall
on BigDecimal type -- Did you mean?
scale
I don't have much experience with nextflkow, so I may be missing something "easy". Hope you can comment and help. Thanks for the support