Use type of current instance instead of hardcoded subject type

fix copy behavior

Stop running some unstable tests on CI (fepegar#796)

* Print output messages during testing

* Skip MedMNIST tests on GitHub Actions

* Fix AttributeError

* Add reason for skipping test

Add support to specify the interpolation type for label images (fepegar#791)

* Add label_interpolation option in spatial transforms and augmentations

* Add label_interpolation option in spatial transforms and augmentations

* Adds missing backtick

* update docs 782

* Minor docs edits

Co-authored-by: Fernando Pérez-García <fepegar@gmail.com>

docs: add snavalm as a contributor for code (fepegar#802)

* docs: update README.md [skip ci]

* docs: update .all-contributorsrc [skip ci]

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Bump version: 0.18.71 → 0.18.72

Add py.typed marker file for type checking (fepegar#808)

docs: add jcreinhold as a contributor for code (fepegar#809)

* docs: update README.md [skip ci]

* docs: update .all-contributorsrc [skip ci]

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Bump version: 0.18.72 → 0.18.73

Fix overlapping in patches aggregator (fepegar#832)

Bump version: 0.18.73 → 0.18.74

Update announcement

docs: add Hsuxu as a contributor for bug (fepegar#833)

* docs: update README.md [skip ci]

* docs: update .all-contributorsrc [skip ci]

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Add check for shapes of input batch and output location

Add support for torch >= 1.11 (fepegar#838)

* added support for pytorch>=1.11.0

* Replace type with isinstance

Co-authored-by: Fernando Pérez-García <fepegar@gmail.com>

Bump version: 0.18.74 → 0.18.75

docs: add snipdome as a contributor for bug (fepegar#839)

* docs: update README.md [skip ci]

* docs: update .all-contributorsrc [skip ci]

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Remove redundant tests in GitHub actions (fepegar#850)

Fix new SimpleITK release breaking tests (fepegar#852)

Bump version: 0.18.75 → 0.18.76

Disable fail-fast in CI matrix strategy

Fix wrong mapping in SequentialLabels transform (fepegar#841)

docs: add iamSmallY as a contributor for bug (fepegar#855)

* docs: update README.md [skip ci]

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Fix SimpleITK version in docs requirements

Fix examples format in docstrings

Improve documentation and tests for label transforms (fepegar#857)

* Improve documentation and tests for label transforms

* Add parametrization with duplicated values in dict

Add example of RandomLabelsToImage

Add example of RandomGamma

Use sphinx-opengraph for documentation

Improve quality of figures from plot directive

[pre-commit.ci] pre-commit autoupdate (fepegar#859)

* [pre-commit.ci] pre-commit autoupdate

updates:
- [github.com/pre-commit/pre-commit-hooks: v4.0.1 → v4.2.0](pre-commit/pre-commit-hooks@v4.0.1...v4.2.0)
- [github.com/pycqa/flake8: 3.9.2 → 4.0.1](PyCQA/flake8@3.9.2...4.0.1)
- [github.com/asottile/pyupgrade: v2.29.0 → v2.32.0](asottile/pyupgrade@v2.29.0...v2.32.0)

* Fix pre-commit not installing flake8

This commit address the comments by @asottile in
pre-commit-ci/issues#118.

Thanks, @asottile!

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Validate arguments of add/remove_image

Return figure in plot_volume function (fepegar#872)

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docs: add guigautier as a contributor for ideas (fepegar#875)

* docs: update README.md [skip ci]

* docs: update .all-contributorsrc [skip ci]

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Update flake8 error codes

[pre-commit.ci] pre-commit autoupdate (fepegar#874)

updates:
- [github.com/asottile/pyupgrade: v2.32.0 → v2.32.1](asottile/pyupgrade@v2.32.0...v2.32.1)

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Stop upgrading pip in CI (fepegar#877)

Update bug report template

docs: add AyedSamy as a contributor for bug (fepegar#878)

* docs: update README.md [skip ci]

* docs: update .all-contributorsrc [skip ci]

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Add tests for Python 3.10 (fepegar#880)

* Add tests for Python 3.10

* Fix Python version in YAML

Use PyTorch to compute Fourier transforms (fepegar#389)

* Use PyTorch for FFT if available

* Make sure tensor in on CPU before calling numpy()

Remove support for Python 3.6 (fepegar#881)

* Remove support for Python 3.6

* Fix Python version

Add support to use different numbers of samples in the queue (fepegar#795)

docs: add jmlipman as a contributor for ideas, code (fepegar#882)

* docs: update README.md [skip ci]

* docs: update .all-contributorsrc [skip ci]

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Fix computation of kernels in `Blur` transform (fepegar#861)

* Fix size of Gaussian kernel for blurring

* Fix typo in docstring

Add support to pass label keys for dict input (fepegar#879)

* Add support to pass label keys for dict input

* Add reference to @josegcpa's code

Co-authored-by: josegcpa <josegcpa@ebi.ac.uk>

docs: add josegcpa as a contributor for ideas (fepegar#883)

* docs: update README.md [skip ci]

* docs: update .all-contributorsrc [skip ci]

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Bump version: 0.18.76 → 0.18.77

Fix support for NiBabel inputs

Remove unnecessary check

Remove error for multichannel NiBabel input

Cover method to print queue memory

Add gallery example for custom resampling transform

docs: add saikhu as a contributor for bug (fepegar#887)

* docs: update README.md [skip ci]

* docs: update .all-contributorsrc [skip ci]

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Move package code to `src` directory (fepegar#896)

* Move package to src directory

* Update setup.py

* Update setup.py

* Move requirements

* Include requirements file in MANIFEST.in

* Stop using requirements file

* Fix warning in docs

Remove setup.py script and add pyproject.toml config file (fepegar#898)

* Remove setup.py and add pyproject.toml

* Add version to setup config

* Remove bumpversion config for setup.py

* Fix path to __init__

* Stop removing trailing whitespaces from setup.cfg

See peritus/bumpversion#78

* Update version replacing in bumpversion config

* Fix tox configuration for pyproject.toml

* Add keywords

* Remove requirements file

* Update authors config

Bump version: 0.18.77 → 0.18.78

Enable verbose mode for publishing GHA

Fix version

Fix version not being updated

As it seems that bump2version is not able to modify its own config file.

Add citation file

[pre-commit.ci] pre-commit autoupdate (fepegar#902)

updates:
- [github.com/pre-commit/pre-commit-hooks: v4.2.0 → v4.3.0](pre-commit/pre-commit-hooks@v4.2.0...v4.3.0)
- [github.com/asottile/pyupgrade: v2.32.1 → v2.34.0](asottile/pyupgrade@v2.32.1...v2.34.0)

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Fix warning in RTD documentation build (fepegar#903)

Add hook for trailing commas (fepegar#904)

* Add hook for trailing commas

* [pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci

* Fix flake8 issues

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>

Disable Binder buttons in Sphinx gallery (fepegar#905)

* Disable Binder buttons in Sphinx gallery

* Update RTD config to use pip installation

* Fix extra requirements string

* Add missing doc requirement

Add checks for TOML and YAML files

Add support to mask 4D images with 3D masks (fepegar#908)

* Add failing test

* Add support to mask 4D images with 3D masks

* Improve docstring

Co-authored-by: cbri92 <70302171+cbri92@users.noreply.github.com>
Co-authored-by: valabregue <romain.valabregue@upmc.fr>

docs: add cbri92 as a contributor for bug (fepegar#909)

* docs: update README.md [skip ci]

* docs: update .all-contributorsrc [skip ci]

Co-authored-by: allcontributors[bot] <46447321+allcontributors[bot]@users.noreply.github.com>

Bump version: 0.18.78 → 0.18.79

Add fftshift to fourier_transform with torch.fft (fepegar#912)

This makes the behavior of fourier_transform and inv_fourier_transform
consistent with earlier versions of torchio. It is also independent of
whether torch or numpy is used to perform the transform.

Solves fepegar#911

docs: add iimog as a contributor for bug (fepegar#913)

* docs: update README.md [skip ci]

* docs: update .all-contributorsrc [skip ci]

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Bump version: 0.18.79 → 0.18.80

Remove incorrect Contributors badge

Stop ignoring some missing imports for mypy

Fix tox running on Python 3.7 only (fepegar#915)

Create dependabot.yml (fepegar#917)

Test all Python versions in Ubuntu only (fepegar#918)

* Test all Python versions in Ubuntu only

* Fix exclusions

Bump actions/setup-python from 2 to 4 (fepegar#919)

Bumps [actions/setup-python](https://github.com/actions/setup-python) from 2 to 4.
- [Release notes](https://github.com/actions/setup-python/releases)
- [Commits](actions/setup-python@v2...v4)

---
updated-dependencies:
- dependency-name: actions/setup-python
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>

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Ignore some files in MANIFEST (fepegar#916)

* Ignore some files in MANIFEST

* Always publish to TestPyPI

* Skip existing TestPyPI versions

Bump actions/checkout from 2 to 3 (fepegar#920)

Bumps [actions/checkout](https://github.com/actions/checkout) from 2 to 3.
- [Release notes](https://github.com/actions/checkout/releases)
- [Changelog](https://github.com/actions/checkout/blob/main/CHANGELOG.md)
- [Commits](actions/checkout@v2...v3)

---
updated-dependencies:
- dependency-name: actions/checkout
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>

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[pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci

Update fpg.py

Proper copy of subclass copies

[pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci

fix parenthesis

imports

Fix proper subject subclass copy

old-style type annotations

linting

[pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci

Fix proper subject subclass copy