# This file is part of DEAP. # # DEAP is free software: you can redistribute it and/or modify # it under the terms of the GNU Lesser General Public License as # published by the Free Software Foundation, either version 3 of # the License, or (at your option) any later version. # # DEAP is distributed in the hope that it will be useful, # but WITHOUT ANY WARRANTY; without even the implied warranty of # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the # GNU Lesser General Public License for more details. # # You should have received a copy of the GNU Lesser General Public # License along with DEAP. If not, see . """The :mod:`~deap.creator` module is the heart and soul of DEAP, it allows to create classes that will fulfill the needs of your evolutionary algorithms. This module follows the meta-factory paradigm by allowing to create new classes via both composition and inheritance. Attributes both datas and functions are added to existing types in order to create new types empowered with user specific evolutionary computation capabilities. In effect, new classes can be built from any imaginable type, from :class:`list` to :class:`set`, :class:`dict`, :class:`~deap.gp.PrimitiveTree` and more, providing the possibility to implement genetic algorithms, genetic programming, evolution strategies, particle swarm optimizers, and many more. """ import array import copy class_replacers = {} """Some classes in Python's standard library as well as third party library may be in part incompatible with the logic used in DEAP. In order to palliate to this problem, the method :func:`create` uses the dictionary `class_replacers` to identify if the base type provided is problematic, and if so the new class inherits from the replacement class instead of the original base class. `class_replacers` keys are classes to be replaced and the values are the replacing classes. """ try: import numpy (numpy.ndarray, numpy.array) except ImportError: # Numpy is not present, skip the definition of the replacement class. pass except AttributeError: # Numpy is present, but there is either no ndarray or array in numpy, # also skip the definition of the replacement class. pass else: class _numpy_array(numpy.ndarray): def __getslice__(self, i, j): """Overrides the getslice from numpy.ndarray that returns a shallow copy of the slice. This one will return a deepcopy. """ return numpy.ndarray.__getslice__(self, i, j).copy() def __deepcopy__(self, memo): """Overrides the deepcopy from numpy.ndarray that does not copy the object's attributes. This one will deepcopy the array and its :attr:`__dict__` attribute. """ copy_ = numpy.ndarray.__deepcopy__(self, memo) copy_.__dict__.update(copy.deepcopy(self.__dict__, memo)) return copy_ @staticmethod def __new__(cls, iterable): """Creates a new instance of a numpy.ndarray from a function call""" return numpy.array(list(iterable)).view(cls) def __array_finalize__(self, obj): # __init__ will reinitialize every member of the subclass. # this might not be desirable for example in the case of an ES. self.__init__() # Instead, e could use the following that will simply deepcopy # every member that is present in the original class # This is significantly slower. #if self.__class__ == obj.__class__: # self.__dict__.update(copy.deepcopy(obj.__dict__)) class_replacers[numpy.ndarray] = _numpy_array class _array(array.array): @staticmethod def __new__(cls, seq=()): return super(_array, cls).__new__(cls, cls.typecode, seq) def __deepcopy__(self, memo): """Overrides the deepcopy from array.array that does not copy the object's attributes and class type. """ cls = self.__class__ copy_ = cls.__new__(cls, self) memo[id(self)] = copy_ copy_.__dict__.update(copy.deepcopy(self.__dict__, memo)) return copy_ def __reduce__(self): return (self.__class__, (list(self),), self.__dict__) class_replacers[array.array] = _array def create(name, base, **kargs): """Creates a new class named *name* inheriting from *base* in the :mod:`~deap.creator` module. The new class can have attributes defined by the subsequent keyword arguments passed to the function create. If the argument is a class (without the parenthesis), the __init__ function is called in the initialization of an instance of the new object and the returned instance is added as an attribute of the class' instance. Otherwise, if the argument is not a class, (for example an :class:`int`), it is added as a "static" attribute of the class. :param name: The name of the class to create. :param base: A base class from which to inherit. :param attribute: One or more attributes to add on instanciation of this class, optional. The following is used to create a class :class:`Foo` inheriting from the standard :class:`list` and having an attribute :attr:`bar` being an empty dictionary and a static attribute :attr:`spam` initialized to 1. :: create("Foo", list, bar=dict, spam=1) This above line is exactly the same as defining in the :mod:`creator` module something like the following. :: class Foo(list): spam = 1 def __init__(self): self.bar = dict() The :ref:`creating-types` tutorial gives more examples of the creator usage. """ dict_inst = {} dict_cls = {} for obj_name, obj in kargs.iteritems(): if hasattr(obj, "__call__"): dict_inst[obj_name] = obj else: dict_cls[obj_name] = obj # Check if the base class has to be replaced if base in class_replacers: base = class_replacers[base] # A DeprecationWarning is raised when the object inherits from the # class "object" which leave the option of passing arguments, but # raise a warning stating that it will eventually stop permitting # this option. Usually this happens when the base class does not # override the __init__ method from object. def initType(self, *args, **kargs): """Replace the __init__ function of the new type, in order to add attributes that were defined with **kargs to the instance. """ for obj_name, obj in dict_inst.iteritems(): setattr(self, obj_name, obj()) if base.__init__ is not object.__init__: base.__init__(self, *args, **kargs) else: base.__init__(self) objtype = type(name, (base,), dict_cls) objtype.__init__ = initType globals()[name] = objtype