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Upgrading to v0.1.8 #15
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Contributor
slzarate
commented
Aug 21, 2018
•
slzarate
commented
- Adding default options for modules to run when none specified
- Refining quality scores
…ng quality scores
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@AndrewCarroll Looks good to me. Do you want to add anything before I merge this and then update to 0.1.8? |
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Nope, thank for you making the pull request from the branch. Merge when ready. |
slzarate
changed the title
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@AndrewCarroll Whenever you have time, please add in the changes you were thinking of adding so that I can upgrade this to v0.1.8 :) |
#17) * Add insert phred scores, filter, fix to header of combined VCF header, and default tool selection for Docker * Fix to int cast in combine_combined * Fix position in combine combined * Further adjustments to filter * Add memory protection to SVTyper * Removing code specific to CCDG * Removing CCDG-specific modifications * Adding fallback strategy for quality scores when exact combination missing * Removing xAtlas/alignstats-specific files * Clean up code, add support for including FASTA index file
…t2 into Refine_Quality_Scores
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