Do not perform _align_alleles when --no-check-alleles is specified.
#184
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When using
--rgwith--no-check-allelesoption, I don't think we need to_align_allelesbetween the sumstats since we know they're perfectly aligned. It causes an error when sumstats has e.g., strand ambiguous SNPs, displaying a mysterious error message:It sounded like the error was because of some
TATAalleles... but in factTATArepresents A1 + A2 + A1 complement + A2 complement...@julirsch